Scaffold Ga0208616_1003508

Overview

Basic Information

• Taxon OID: 3300025417
• Scaffold ID: Ga0208616_1003508
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE16Oct07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2885
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (92.31%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F038106	Metagenome	166	Y
F068426	Metagenome	124	Y
F083677	Metagenome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208616_100350810	F083677	AGG	MSHFDGMALDELQSYFSDFHKDYYGFRPRFATHEEWNNRDWLVEHIDGIHDAMDAMKKTPEGRKQLRAQGWVIDEREFL
Ga0208616_10035083	F068426	AGGA	MNKWEFVVSELKSLQQGFQDHQAIAELFVEQKLLYGYNIIKSKDQVYKR
Ga0208616_10035084	F006060	AGG	MLKFENIAKVGDIIRAYDFKPCDGRDDAFIEGVVENANCNEPGFNCFKITVTADKFHKFETKPKKENRVGRIMFVPHETGFMEFDHRIINLSKV
Ga0208616_10035085	F038106	AGG	MNLSYKQKEVIMQEMFKMHKSPAGFSSIYKGAPVYNYEAIKQFIDFTKYYVMFRGPRPHRGYSTRKRDAHSFDVYKRSERDTIRIRAELEGFKRGVKWAKDNV