Scaffold Ga0208381_1000005

Overview

Basic Information

• Taxon OID: 3300025405
• Scaffold ID: Ga0208381_1000005
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE13Jul09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 132618
• Total Scaffold Genes: 173
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 130 (75.14%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F027396	Metagenome	194	Y
F029972	Metagenome	186	Y
F033683	Metagenome	176	Y
F037031	Metagenome / Metatranscriptome	168	Y
F045505	Metagenome	152	Y
F067354	Metagenome / Metatranscriptome	125	Y
F102402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208381_1000005118	F067354	GAG	MNNPFNSPKPRILPKVGYAKTSFNIVSPLIKLDIIKEGEGRKCRNASKLDLSNSIYEKIENE
Ga0208381_1000005138	F045505	N/A	MKKITITISYDAMNLQSDELANSEITETITGLANSLRTQVNNVQVSLKYKDQ
Ga0208381_1000005144	F102402	GGAG	MDTTAENIRNVVGILTAILSEQEELAYEMVLESDPIELFSCLTGILLSALNAIADSNGRTVQDYLEDLGMSAFKSI
Ga0208381_1000005146	F033683	GAG	MDNNDLLRTASKVTADTQWFNGSSDSIFNRLDRLQELLETTRMAASNPNVSQAELDEFTNIITATDAEKEALEKVASEWVDFDTEDYLQSLPGGTVASVYRVSSAGTSDLGEDDGSLLYRTARSIEDEFEDADWINFVTAGAEVWVEDQTSQLLSDQINTREAAVFYVEQKTLPILDVEKRAAIIDNFVDNAEICRRAKKEGSTLRSIEAGRINKLAATFVENSVNESFGEDLNWL
Ga0208381_100000516	F027396	GAGG	MTQPRKSRKQEIVQGQMTWQILERLLNNYREWYEIYKTSGNPELELLNGVTVNIYDLLEGIKELPLRQRQAVVLSCLENRKEVEVAKIMGFTKWSSQVGMYKRKALKTLCENIWGNYESG
Ga0208381_100000517	F021233	GGA	MSQFKKGLEGLQEPSLAEEHDEKFGDLHNFVVRAFTWESKPEEFDALETIEKMVEEFMKEYLHPAEVIIARFNSDVHMGSDEADRLFLNLQSTIVAIEEEVTRRYLKAQFSYYIWDDKYWEAYRKPVSGTQSDLQARARMETRDDRYFYFVQYAAWRQINDKVQSLKATQRYIQNQIYRR
Ga0208381_100000520	F029972	GAG	MGKFQTKMSQRQERELEEQWPKSKRTIGSGAKWEKADLQTTEFQGMEFMIECKSTQSSSFSITKTIWNTVKSHAQNKSWLSRPVLAIRLYGPTIEMTEWGERENTPENLPVLLDLVVLDKDDFLELYSDYLRLKENE
Ga0208381_10000056	F037031	AGGA	MAKDVGIPGIAPEDVKVSPEAQAQIDAYLASQKAEEAALGKEQEIELYESELMAVWQVLKDLQEKYAYRKASFENLVSLKGEADEKFEKIGLQVVVDWVLPGISQTPQPPTITIVGRIGEAEFNPEQARYEIGEGIADDYYKAKREVNKMGNKKLIIPGR