Scaffold Ga0208380_1003209

Overview

Basic Information

• Taxon OID: 3300025392
• Scaffold ID: Ga0208380_1003209
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE27Jun07 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3381
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F038097	Metagenome	166	Y
F046749	Metagenome	150	N
F063289	Metagenome	129	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208380_100320910	F038097	AGGA	MYITERTGTIRLPAEPGLLEWLQSQYPYSKYRLVQE
Ga0208380_10032093	F063289	GAG	MASLIQSEMRVAMELKRDGWVYDMTGLSVTECQDRANWCREAFGPMFDDITWAGKWYGAQLPFQTGGVNVNRQFVFMFRDDKLYTIYRMMWPE
Ga0208380_10032095	F046749	GGA	MMSDPNQHFYNQMEMHVRDSNRTLRRLRRPPLPQVNAWDVTMSDEMLYQQVYVDEVPCVDILMPKDRLQTIINYIKYAESEIDKHETDKKLMARYERDRIVRLNNPAVEKAYQYYCTLLELCRT