Scaffold Ga0208250_1000273

Overview

Basic Information

• Taxon OID: 3300025383
• Scaffold ID: Ga0208250_1000273
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 17023
• Total Scaffold Genes: 54
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 42 (77.78%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F009268	Metagenome / Metatranscriptome	320	Y
F068426	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208250_100027313	F009268	N/A	MKKWMEKEYSQWVYYDDEDGKIIGTVYKVGNTQTIWGATVHRQNVDGALGQYIDSDYAKKSIEYFWTVQERKTIEMGNIK
Ga0208250_100027331	F068426	N/A	MVCLIKGNMNTWDFVVSELKSLQQEFADDQPIVELFVEQKLLCGYNIIKSKDQVHYA
Ga0208250_100027332	F006060	GAG	MNHFSKAKVGDIIRAFDFKPMAGRDDAFVEGVVEQANCNEPGYNCFKITVTADKFEKYETTPHKENRVGRIVFVPHQVSFMEYDGRVVNLSE