Scaffold Ga0208250_1000054

Overview

Basic Information

• Taxon OID: 3300025383
• Scaffold ID: Ga0208250_1000054
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE18Aug09 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41479
• Total Scaffold Genes: 61
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 49 (80.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F033624	Metagenome / Metatranscriptome	177	Y
F074312	Metagenome / Metatranscriptome	119	Y
F083897	Metagenome / Metatranscriptome	112	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208250_100005415	F074312	GGTGG	MDIERAKQKIEDAKTSMPLGHKDYEWMDGFNHGLDWALRILEGDKSAS
Ga0208250_100005420	F033624	N/A	MSHGDLSFATIEAVARFNFNRAKGNDASQGHAPTWVEQVAREISGCLGEIAIARWQDKFPFALFTERKMGDVGEFEVRTTAYATGKLLITEKDDPARKYLLVTLPTFYTANIHGWMYGYEAQDAKYYNTSMRAPVYAVEQKYLHAPETIYG
Ga0208250_100005435	F083897	GGAG	MSNEIADLRATPGSEADYRSLGPISICPCGSDLWNVKCKFDDDGELGIYFLDMRCALCDSLAVAPMPKLDN