NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208738_1000352

Scaffold Ga0208738_1000352


Overview

Basic Information
Taxon OID3300025379 Open in IMG/M
Scaffold IDGa0208738_1000352 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12894
Total Scaffold Genes31 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (87.10%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000652Metagenome / Metatranscriptome959Y
F005705Metagenome / Metatranscriptome392Y
F010245Metagenome / Metatranscriptome306Y
F013757Metagenome / Metatranscriptome268Y
F029335Metagenome / Metatranscriptome188Y
F052344Metagenome / Metatranscriptome142Y
F083613Metagenome / Metatranscriptome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0208738_100035215F052344N/AMPFIQYEVWGITDQHEELIECVPTLKEAEEIAEVEREFCDEVYILEDTDDDLKEVRRYQG
Ga0208738_100035220F005705AGGAGMKIVIKVPKQVRAHIVLFCKDTPFKPKRVENKLAYKRKPKHKGRDYE
Ga0208738_100035222F000652AGGAGMKKVKVETLIVQELEVPEDWGREEVYDFLAEFQSFRTAFQGVSNEDQTARIVDLGVLTEEVTELGDEAYDD
Ga0208738_100035227F013757AGGAGMLTNCVAKAKLVFNKKLQSYKLVVAFNAHKTIKKVGNTEVIKYNFPTQSKCAYVSGDLLAENLSVELAKVLPNVYKTIRTNSVEFVE
Ga0208738_100035229F029335AGGAGLRTITTMNNGNIYQMDITEAIEIVEAYKRVNGHPGVLEAVMEMGDRVALDELPTIQKVAYRRFMKDMQALFAPVDA
Ga0208738_100035231F010245N/AMKTKRTARKDSNFVIYCAFHNGLAYIGLTRKGSTTVTKAVKERWRKHISRARHEDRDWELYRYIKSGNWDGWTHTVLDVIRGRAEAYAYERELVKQIQPELNDQYL
Ga0208738_10003529F083613AGGAGMGYFTDCDFDSTLDMIDCVNEVVERHVRKMERSSPTELGLDVRCGPVYIDRDEEVIAVSHSSAIDYYGGFEYIKEDEGRKTCGDYTFFTTESSRVQDCFDHLNEEVDTE
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