NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0208738_1000064

Scaffold Ga0208738_1000064


Overview

Basic Information
Taxon OID3300025379 Open in IMG/M
Scaffold IDGa0208738_1000064 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBE21Jul09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33064
Total Scaffold Genes57 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)37 (64.91%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007848Metagenome343Y
F017467Metagenome240Y
F037693Metagenome167Y
F040482Metagenome / Metatranscriptome161N
F042791Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0208738_100006422F037693GAGGMALVKITVTCPHCKVDHEEYDPTQYDDRETYLAYWNLPFEGEEADKAWQQKLEMTPKQAPMVIPDIEGHISMADGTWVDSRSKHRENLKRNNCIELGNDVPIEQKKHEISRKDQEARKRQIAEIAYAKLNYK
Ga0208738_100006424F042791GGCGGMFSTAFQANAFQNNAFQVYVPPANVNIGGDGWTREEWLRAQRLDKKIAARQRLLEKATKEANANRKQAIRDLVSPVAKVKQSKVQSKQEVKADIPLAETEDLQRSISYLERQRDNILAAVAYRKQQTLIQEHLRVLEAKRLEELDDEESILILLH
Ga0208738_100006444F017467N/ALKNNSDSYLVDWYIGVAKRRGWDEVVRLLKQYPEKEERMKMLIKQRLGK
Ga0208738_100006447F040482GGAGMTWNLRLVDLSNPYEDYFEIREVFYDTMGKPIGHTKAAIGGEDRIEVDRYIELAQQALAKPTLKFPKND
Ga0208738_100006454F007848N/AMKDFIGTCLLGALLGAMFAYGVPCKAQSYQVTTPMGYNGGTVQINGNTAQFVNPAGVITQTATLYPNQIVITTPNGVTTNVVGNAGYTVPSSSSTPPSPRVMQ
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.