NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208620_1000003

Scaffold Ga0208620_1000003


Overview

Basic Information
Taxon OID3300025368 Open in IMG/M
Scaffold IDGa0208620_1000003 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH24Jun08 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)65567
Total Scaffold Genes102 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)79 (77.45%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location
Location NameCrystal Bog, Wisconsin, USA
CoordinatesLat. (o)46.0072Long. (o)-89.6063Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012096Metagenome283Y
F013252Metagenome273Y
F016247Metagenome248Y
F016499Metagenome / Metatranscriptome246Y
F017424Metagenome / Metatranscriptome241Y
F048757Metagenome147N

Sequences

Protein IDFamilyRBSSequence
Ga0208620_10000031F012096GAGGMSTWLIAAMGVVYFVVAIDQFMKGGIGTGIMFLGYAMGNVGLVMVAK
Ga0208620_100000310F048757N/AMNLKQLLKRAGVSNNIIAEVERKAKMTTAQQEIEHQEKAAAMAKMMLNDVMPHLHSAMSKTPPSKPKKTIIIPD
Ga0208620_100000315F016247AGGAGMSNFIVEHNYKGNYVMETITGVEDLDTSQYKDILGIWVCDSFEELQIMEKELKEMRNARPRQQA
Ga0208620_10000034F016499AGAAGMAQIILELGKQGASQKSMYAAIHISKSTAAKWKEENPKFAETMSMATTYGQSYWESLMLANVENKAFNSRVAELALKGQYPEDYGQQRVDLKANIRQEVTIDFDKEIAELMEMLK
Ga0208620_100000354F013252AGGAGMAKNPQDGGELGFRKTYKMTGTPGNAGGPGEKTIDQGTSGSKRSNNAVLNQNKVKSSKVGPDKNLNDIGGGNFY
Ga0208620_100000355F017424N/AMKDFISEIIARTRDEQAKLAETLTAGNNVNSFDDYQRLVGRFEGFKEVLGIIDEILREDEEDL
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