Scaffold Ga0208505_1000021

Overview

Basic Information

• Taxon OID: 3300025366
• Scaffold ID: Ga0208505_1000021
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH15Jul08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55371
• Total Scaffold Genes: 79
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 29 (36.71%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030662	Metagenome	184	Y
F038058	Metagenome	166	Y
F039455	Metagenome	163	Y
F048735	Metagenome	147	N
F055388	Metagenome / Metatranscriptome	138	N
F072994	Metagenome / Metatranscriptome	120	Y
F080806	Metagenome / Metatranscriptome	114	Y
F089761	Metagenome	108	Y
F091224	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208505_100002117	F080806	N/A	MHHIDTAATGAIGMTAPIAAAAISFDPTLDLELRIISMAIGIFVGLASFAKLAYDLYADHKNRKK
Ga0208505_100002118	F072994	N/A	MITLTSPITISPAPVHGKPLKPTTLTSIDYSVSYDNSQQQAVAQLKGVNVGITLWSQHTTPPYSSIGQFTDADTDARLSELLNVKSGNDSIQAAILALFPQPYKQK
Ga0208505_100002123	F055388	N/A	MAQNGVTFSSCQDVDTLFREARTYYNPFFIKKMAINSIYYGRLETETWPLNTLPTQKAFRFGRGWYNPDQPWQEVQSGRCIQNADDVQFEFIAHPGTESYSFSLFTKAMRTDWYQLTDFMYRLFPQEEMDHIMATNVNITKNVHEEFARSNWIGGAGHKWVPISNGQSLVSCVTPDDQMFIVQPFEGTNEGSFNMGYVYVKLPASQLNNIGLLSLDTLDDILINLQREDDAYRLDVSEAAGRPLLEIIVPDARVLRQLWQYAKQSGGWWESVSDFDDKQLQYSLGIDRVIGNYAFCNDINGVRLNVDWVYNASLPTFNVNDPTTWPRLVRVLPYVPVTTELGCKYVQNPAFNYADFGITNPWVNKAMIKWISPSQSGIGEAQGMTQNYAGDWEWKNPDWECNIKRDQGFFWNQFRMGMQFQDPTLMHSILHRLNNAQLVIPAACNLTPNYTPQYTPDCYVCSDVITEPI
Ga0208505_100002128	F030662	N/A	MKLKNPNDAIPGGLWYQYSDDKGNTYRVNGMDLTFGRQFIQKVKSDMTNKNVAIPENLEYLVEQQICQRIAGQYCWQEAGDAVANVIHKFAHLGDKVASTFGINAQLETRAKNCPSCQRRREALNKAIG
Ga0208505_100002129	F048735	AGG	MEYNGLSLQPPQDTTYGLSFLETVPQFIRELTAYRLTRGEFGRRERIKMGIKLDQCGLLNPAQHMVNCFQLIYGNDVLLHSQGIPNNYALDIIDLFCNENDWGIAGCASSGKTFSVAACIVIDWLCAPDCTSTYVASTSLDASEDRLWGKVCTLYRIAMRNLQAKYGKDTSIGNLVEYRRMIVFESIDTKDTERDYTNAIKALAFPRGGEGKRSVENTRGRKNARMRLFLDELAEMDLYALDTRVNLGANPDFIFGGMANPSNTANNPHTELCQPDDPLEWDAVNRYTHKWTTRTGVALHLSGEDSPNFKLPNAEVPPFDRFLTIQGEANTLKRCYGNKNALEYWRNVYGWWPDSSVELTIFSKQFIQACDIAWEPTWSDRTKVVCGFDPAFTAGGDRCAATFCRYGPNDTGRRVGFYLGTREYNSSVGDVFEESIAMQLVKDCVEYGVHPRDFGLDISGDGGKMLRAIIIEWGKFHPEAMFIHPISSMGMPTERKISSLDKRTAKEAYDRRVTESWFQVHTAMSTQSLLGINVEKHTALVNELCSRLYFHKGRKVAVEKKLDMKQRIKKSPDLADSLTYAVEMLRKAGLEFTFEEEQESLDILEIRDWEEKLVYSKNGVGKEVEDQDDWGYGGSSCDEDGF
Ga0208505_100002140	F089761	AGGA	MTMRYPESDFTRPSIMLLRSLVHELGEGVSKEPGGYGGLKMERKRLGDILKEHIDDPRLSDWDRDMIKGL
Ga0208505_10000215	F038058	N/A	MASHGVQYTVDKTERGVVSDHATPQPMQRVQIRNDIPTIRAYKDARTARIKAIGESSQSAFSVGGPANESGMGKNANPFNCDWL
Ga0208505_100002169	F091224	AGGA	MRSAIDNILNELGMDTPDLPPINKQEALEMGLIKGRDKPKTCACGKSAFSSESKCDAAIKHRLKQGFGGTGFLRAYECDIERGNWHMSSVNHKNKL
Ga0208505_100002173	F039455	GAG	MPSVHVNTGRYGDIIAFLPVLLNEYKETGINPRLVIAKEYADILDGVSYVDPLVWDGAFEDVSGSIQFAKQFTDDVKTSQVVGISDVIVSQVYGNSHAPKIVCDSFLKDAWKLADKLDLWPSQPPLVFDRRDKKREQTLTKGLGKDKPWLVVSTGGVSSPFPYSDLLWEILNHSLPEFHIVDLAKIKAERMYDLLGIMDHSNTAAMILTDSGPLHLSYASTKPVHALVADSPNLWHGTAWRPSYASYTRYKNFPREITRILDLIRNPPVKPKYPNIIHVYQRTPWESGEEKRRNAVAKKTWDKIGWVDLGLDDSCFVRNSSNVIPNEKKNIPMIKDMIRMACIGREDRDVIVLTNTDTCVASNIVERLVGNMPAYAYRYDFNKIDGPIPDDEIIYGTKYAGCDLFAFRVGYWRRNHHLFPDMVLGRESWDRIMRELFKLSQGRELYSAIYHEKHDSFWESAVNINSDPSNLRNRMLARKWLQERNMPLEELESRNYEGKFKKITKKR