Scaffold Ga0208504_1000001

Overview

Basic Information

• Taxon OID: 3300025358
• Scaffold ID: Ga0208504_1000001
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH05Oct08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 106865
• Total Scaffold Genes: 141
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 114 (80.85%)
• Novel Protein Genes: 10
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (70.00%)
• Associated Families: 10

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F021233	Metagenome	219	Y
F029972	Metagenome	186	Y
F035607	Metagenome / Metatranscriptome	171	Y
F037028	Metagenome	168	Y
F037031	Metagenome / Metatranscriptome	168	Y
F045505	Metagenome	152	Y
F052345	Metagenome	142	Y
F067354	Metagenome / Metatranscriptome	125	Y
F094805	Metagenome / Metatranscriptome	105	Y
F102402	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208504_1000001108	F029972	GAG	MGKFQQRFSQRQERELEEQWPLAKRTVGSGNKWEKGDLSTQEQHMIEFVIEAKSTQAASFSITKKIWDTIKGHAQDRSWLARPILAIRLYGATEQETSWGGTISHTPETLPVELDLICMDKDDFLELYYEYIRLKEKENE
Ga0208504_1000001113	F021233	AGGA	MSISKGINRGLEGLTEPELGVSHDDKFGELHEFAVRAFTWKTKPEDLAMLDTIEQVVDSFMREYIDPAEVIIARFNTDKSIGADEADRLFLNLQSAITAIEEEVTRRYLKAQYSYYMLDDKYWNAWRKPTGGTQKDLEAVAKMETREDRQFYFVQYAAWRMINDKVQSLKATQRYIQQQIYRRT
Ga0208504_1000001115	F052345	AGGA	MDRRTREYNELVKLTPTTEELLSEEIDGEMYLYKSSPNCKICTTSDDLKNIIDSLLLFPKSYKEVLQAIEPIQDKLGIEGKERINYENIRNHQKRHLPFEKRMVREIIEKRAREKNRSILDAGERLLTAEAFYEIIVAKGFEGIALGYDKPTLTQTMHAMDMLSKLEKEGKDDYRPEDLLNQLDLILTAIREVVPPAMREEIFNKIEEYQGNSIKKPKKNKPAMIEADGDYIDEDLEDL
Ga0208504_1000001119	F037031	N/A	MTTDINEIGGIRPEDVKVTPEQQAQINAYLAEQKREEEELGKEQPIELMESELMDVWHLLQELQYKYGNRPGTFANLTSLRNEADEKFHALGFQVVVDWVMPGLMQLNGQASPEPPTITIVGRVDGSEYNPEQNRYETGAGVADAYYDAKRQSLGMSNKKLILPGQ
Ga0208504_100000125	F067354	AGGA	MSTLFNNETPRMLPKQAFNKASFLSVVSPLVKLEIIKEGEGLKCRNAHKLNLADSIYEKIED
Ga0208504_10000013	F102402	N/A	MDNVSINIGNVVAILTAILSEQEDLAYEMVLDSDPIELFSALTGILLSSLNRLSQLTNVTTDSYLKDLGILAYKTQ
Ga0208504_100000134	F035607	AGGAG	MARTVSKSSDTSSESTTIPVVDLGGHFEEHVPDAADRSAALQKRAPASFQGMQDIKTADWIENLMDGSTVFASDKGSFKLNGAGFHGSIQPIAEEIRKDPYLLRAVQRGRIAFITAEEAESKIAELRDENSTSESHMDHLRESLAAGASENTGLYKIPLPDEAEPKPGKTQTWEEVWASSTSTPKPKNV
Ga0208504_100000135	F094805	AGGAG	MSEETKNTVKPSDAVAEPLGAIIPSGTVLSGTTIYNEPWFNVWVPQTFAGTVVSGSATVTLSGNGWNGQNNQGLIFQNDQYNTTVRGF
Ga0208504_10000019	F045505	N/A	MQKATITISYDARDSQSEELASQEISETIAGLLNSLRTQVNGVQVTVKFQNNKEK
Ga0208504_100000190	F037028	AGGAG	MEKKSFDGDPTNYDDDSYDDVVEVKVVESREELVANIDLTKATPRELLIYFADRFKETHGYSYNVEWVKESAIFKSFLDRYGVDAGPMVALLFDNHKGKLNDLVMTATAFSKGSKWIQDTLYIELQQQKQKEQNRNSTEGLMSTDDFIERFAV