Scaffold Ga0208255_100002

Overview

Basic Information

• Taxon OID: 3300025353
• Scaffold ID: Ga0208255_100002
• Source Dataset Name: Freshwater microbial communities from Crystal Bog, Wisconsin, USA - CBH06Jun08 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Bioenergy Institute (JBEI), DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 56201
• Total Scaffold Genes: 98
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 79 (80.61%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (80.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater → Freshwater Microbial Communities From Crystal Bog Lake, Wisconsin, Usa

Source Dataset Sampling Location

• Location Name: Crystal Bog, Wisconsin, USA
• Coordinates
  • Lat. (^o): 46.0072
  • Long. (^o): -89.6063

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006060	Metagenome / Metatranscriptome	382	Y
F030989	Metagenome / Metatranscriptome	183	Y
F034813	Metagenome	173	Y
F063404	Metagenome	129	Y
F068426	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208255_10000211	F068426	N/A	MNTWDFVIKELKSLQQGFEDTQPIVELYVEQILLKGYKVIK
Ga0208255_10000214	F034813	AGGAG	MSYDSNFESVYMVEFDSGRTIHVQFFDVEEVKEYCAENYGLDSIKYIYKEVYCNFAEAE
Ga0208255_10000242	F030989	GAG	MKYIAKPSLFNNNGLKEFTNGLDAVLYLNKVLNDDLVDPALDYVFIAPKASPKQLKHAIEEYTGIGKLQIVA
Ga0208255_10000244	F063404	AGGA	MDHISRQDIMLMLSVKGYFSTDSLVKMSDEELDNLYIEYVVLEEQYA
Ga0208255_1000027	F006060	GAG	MLKFEGIAKVGDIIRAYDFRPMAGRDDAFIEGIVEQANCNESGFNSYKVTVTVDKFKKYETKPNPRNRVGQIVFVPHQTSFHEFDFRVVNLSKV