Scaffold Ga0209669_101945

Overview

Basic Information

• Taxon OID: 3300025345
• Scaffold ID: Ga0209669_101945
• Source Dataset Name: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7491
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (54.55%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F075483	Metagenome / Metatranscriptome	119	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209669_1019453	F075483	GAGG	MIELLAVQTITTLALAFFVIKLRRELYPMIAGAGPTHASFWIRSVDVLVVEAPQFEVSKTVIRVRWLLSEELFLIHSLRVYDVAMHPYRRHHYVRWKAWMQGDDRYKCEVEKPRGLSRLYNKAIDVFCKEKEPPKEVVILPSRWRKRRYKQFK
Ga0209669_1019454	F013155	GAG	MELYQVAVIAIALANLAVTVWLLRLLIPVWQTLRKVVFALDHYDFDKLARQFLGNEKPLAESVVVKTSQKEREGYREISIIRTYKKPLDTKEIQENFVRQMAERLQ