3300025345: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025345
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0067861 | Gp0093345 | Ga0209669
• Sample Name: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 69503882
• Sequencing Scaffolds: 25
• Novel Protein Genes: 43
• Associated Families: 14

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Bacteria	3
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp. WP30	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	1
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	2
Not Available	11
All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	6
All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → hot spring → spring water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Water (saline)

Location Information

• Location: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69
  • Alt. (m): N/A
  • Depth (m): N/A

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013155	Metagenome / Metatranscriptome	274	Y
F021443	Metagenome / Metatranscriptome	219	Y
F038745	Metagenome / Metatranscriptome	165	Y
F051572	Metagenome / Metatranscriptome	144	N
F063403	Metagenome / Metatranscriptome	129	N
F069506	Metagenome	124	N
F075483	Metagenome / Metatranscriptome	119	Y
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0209669_100028	All Organisms → cellular organisms → Bacteria	91010
Ga0209669_100405	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp. WP30	25251
Ga0209669_101585	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae	9069
Ga0209669_101891	All Organisms → cellular organisms → Bacteria	7691
Ga0209669_101945	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	7491
Ga0209669_102452	Not Available	5871
Ga0209669_102732	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	5204
Ga0209669_104013	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon	3258
Ga0209669_104965	All Organisms → cellular organisms → Bacteria	2419
Ga0209669_105223	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum	2258
Ga0209669_105467	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	2118
Ga0209669_106724	Not Available	1582
Ga0209669_108333	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1137
Ga0209669_108383	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	1129
Ga0209669_108856	Not Available	1045
Ga0209669_110223	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	858
Ga0209669_110548	Not Available	821
Ga0209669_110865	Not Available	787
Ga0209669_111371	All Organisms → cellular organisms → Archaea → TACK group → Crenarchaeota → Thermoprotei → Thermoproteales → Thermoproteaceae → Pyrobaculum → unclassified Pyrobaculum → Pyrobaculum sp.	740
Ga0209669_111616	Not Available	718
Ga0209669_112466	Not Available	652
Ga0209669_112524	Not Available	648
Ga0209669_112678	Not Available	637
Ga0209669_114597	Not Available	520
Ga0209669_114824	Not Available	509

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0209669_100028	Ga0209669_10002814	F063403	MEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDMPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSTDLLEQGSSGMPGDQ
Ga0209669_100028	Ga0209669_10002826	F084856	MERGDAMFDLSNLMIVTHLYTKEHAEALSLTLSEWRKSAPSSQIIVGYYQSRFQPSDFSNLMQDDAVQFVPVSNSSYGAAYNTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPIIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLSSNCNPVRYVKPETQTDRKSSKPYGRR
Ga0209669_100028	Ga0209669_10002857	F092976	MTVQEILHWKQELRRVMQEFLQVWQKCPKCGAKWADIAWDAESDHESLLVECRSGHLFRVDEQFWLFDYDDTGVYAPSETAMAEVSAHAG
Ga0209669_100028	Ga0209669_10002862	F080678	MFAKKVDAKTTPIAEVYDNWEKIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0209669_100028	Ga0209669_10002865	F100012	MDREKVLQALKEAQAEYDIKDLDRFVRTAWEEGDALQAQFVAEMIERAVEILFERHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYSWKSASFRARIRSADDAVDAVMRLVELIEQNLKSRAVE
Ga0209669_100028	Ga0209669_10002866	F069506	MELEQLTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDEPDFPNDIPELIMRTVEKIVGSPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALADA
Ga0209669_100028	Ga0209669_10002867	F086364	MEREEIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVELLTDRKFGWHEDPLKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRLVQRA
Ga0209669_100028	Ga0209669_10002871	F104114	MERLRLWLSLTQDEKFAAAERELKNAILDIHEDFEEEWSLSRSVEDFAPDGLAEIVIQTVEALLGLQWRLEWDYGADADDMVLSSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQVSLIKEVK
Ga0209669_100405	Ga0209669_10040523	F038745	MDKAVMAVCGELMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELIKVMEGRVKLEELGLPAPALKALAEELGPEPRWHDALAASFFRLYLGVYRRRRVDGRDVALALCLWAQKKRLEDPWNPLWRAAELKPDKLYTEEEARKALAINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV
Ga0209669_100405	Ga0209669_10040524	F051572	MTSRTHSGPFAEVRTFADVVLEGGCKKSLQFLNAHFDLCVLTVLIKTAPAGPMVKLRPEMVRRLVEEVAAAVGGGDRERIRNAMLKRAGEMMAQLRRELGDSAPSEAYVAKLAELFLKKLEA
Ga0209669_101585	Ga0209669_1015857	F013155	VAVIAIALANLAVTVWLLRLLIPIWQTLRKIVFVLDQYDFDKLAKEFLSNEKPLAETIDVKVSEKKEEGYRELTVTRVYRKPLDPREIQENFVRQMAERLQ
Ga0209669_101585	Ga0209669_1015858	F075483	MIELLAVQAVTTLALAFFVIKLRRELYPMIATAGPAYASFWIRSVDVLVVETPQFEASKVVIKVRWLFSEEIHMTYSFRVYDVAMHPLRRHHYVRWKAWMSGDDRYRCEVEKPRGLSRLYNKAIDVFCKEKEPPKEVVILPSRWRKRRYKQFK
Ga0209669_101891	Ga0209669_10189110	F088087	MKASDGSVWTPVTVSSAPCEVCKRKSRSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE
Ga0209669_101891	Ga0209669_10189114	F092976	MTVQEILHWKQELRRVRQEFLQVWQQCPRCGAKWADIAWDAESDHEFLLVECRNRHLFRVDEEFWLFDCDDHSDAGVYAPSEEVSVHAG
Ga0209669_101891	Ga0209669_1018915	F086364	MEREKIIAALETAFAEISGAEYEDEPVTFAEFLESFAKFRDPDFPVYWIPYTIEEAVESLTDRKFGWHEDVLKDEWSYTGEFGFVCVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRLVQQA
Ga0209669_101891	Ga0209669_1018916	F069506	MQLAQVPYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDPEFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALTAA
Ga0209669_101891	Ga0209669_1018917	F100012	MDKEKVLQALREAQAEYNIEDLDRFIKQAWEEVNILDAQIVAELTERAVEILLDQDFLWAHIIESEDCEEWIPDGWYSFIAVHPETGQCLTFLKDPVYSWESRISFSARIRSADDAVDAVTGLAELIEQNLKSRAVA
Ga0209669_101891	Ga0209669_1018919	F080678	MFVRKVDAKTTPISEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISARKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0209669_101945	Ga0209669_1019453	F075483	MIELLAVQTITTLALAFFVIKLRRELYPMIAGAGPTHASFWIRSVDVLVVEAPQFEVSKTVIRVRWLLSEELFLIHSLRVYDVAMHPYRRHHYVRWKAWMQGDDRYKCEVEKPRGLSRLYNKAIDVFCKEKEPPKEVVILPSRWRKRRYKQFK
Ga0209669_101945	Ga0209669_1019454	F013155	MELYQVAVIAIALANLAVTVWLLRLLIPVWQTLRKVVFALDHYDFDKLARQFLGNEKPLAESVVVKTSQKEREGYREISIIRTYKKPLDTKEIQENFVRQMAERLQ
Ga0209669_102452	Ga0209669_1024528	F104114	CIMERLRLWLSLTQDEKFAAAEKELKDAIVARYDEFADEWFLSRSVEDIAPSALADSIIQAVEALLGLQWRLEWDYDADADDMELDSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAEKLPVVRSQVSLIKGGEVRWHTG
Ga0209669_102732	Ga0209669_1027321	F051572	MSRGRAHGGPFAEVQKIADVVLKGGCKKSVQFLDAHLELCVLAALVKAAPAGSMVRLRPEIVRRLVEELAAAAGRDRERIRNALLKKAGETLAQLRRELGDKAPAEA
Ga0209669_104013	Ga0209669_1040131	F021443	EFACPYPPYVTCYNDNYYQINEILSFAVIDLVFKIVNQQKRKSIILKKRKPIIHLLNYIDTLNFNSNSNKFEITFPLENEYEMLLIYNLFLYRSSHQERYYNDLHKNNLKVIEHKNSCIIRLKYDGSDIIQPRNLNLATMLMRILKKEEIDVDLNGMIFYCIFLM
Ga0209669_104965	Ga0209669_1049652	F086364	MEREKIIAALETAFAEISGAEYEDEPITFAEFLESFAKFRDPDFPVYWIPWAVEEAVEELTGRKFGWHEDALKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRISRD
Ga0209669_105223	Ga0209669_1052234	F038745	MDKAVVVVCGELMQISLAFSAYYPLCSGGQPCAFAEAVERLIRRAASARGAEELLEAINGRVRLEGLGLPDPALEVLAEELGSEPRWLDALAASFFRLYLGLGRRRRVDGRDLAFALCLWAQKKRREDPRDPLWRAAELEPDRLYTEEEARKALEINEAFFRRLWRRALVFHRGEKAYGFQLILAALSLMAAPPRSA
Ga0209669_105467	Ga0209669_1054673	F051572	VWAFADVVLKGGCKKSPQFLDAHLELCVLAALVKAAPAGSMVRLRPEIVRRLVEELAAAAGQDRERIRNALLKKAGETLAQLRRELGDKAPAEALLAKLVELFLKELEA
Ga0209669_105467	Ga0209669_1054674	F038745	MDKAVVVVCGELMQISLAFSAYYPLCLGGPPCAYAEAVERLIRRAASARGAEELLEAINGRVRLEELGLSAPALEDLAEELGPEPRWLDALAASFFRLYLGLGRRRRVDGRDLALALCLWAQKKRQEDPRNPLWRAAELEPDRLYTEEEAREALKINEALFRRLWRRALAGDKAYGFQLI
Ga0209669_106724	Ga0209669_1067241	F021443	MKCLFNSGKLTFRFGYPLITYVTCYNDNYYQSNGILSFAAIDLAFKIIKQQERKSIILKERKPIIHLLNYIDILNFNFNRYKFGITLPLKNKYKTPLIYNLYSYRNLYERRYYKDFYKDRLKVIERENLCIIELDYDYASKIQPKNLNLATMLMYILDKEEIDMIDGNGIIFYCV
Ga0209669_106724	Ga0209669_1067242	F021443	MKCLLNDERLTLVFKHSYITCFNYDYGYYQSNEILSFAVIDLAFKIISQQKRKKSIILKKRKPIIHLLNYIDILNFGSNSNRFDVAFYLKNKYKVPLIRNLYLYRSSHRKRYYEGFYKDRLEVIERENLCIIKLEDDYVNIIQPKNLNLVAMLMHILTKEEIDMLEGDGTIFYCIFLI
Ga0209669_108333	Ga0209669_1083332	F013155	MELYQVITVVIAIINLAVTVWLLKLLLPLWQYLKKVVFVVDEYDFNRLINQFLNGEKPISETIHIKTTENKDEGYKEIIITRAYKKPLDPREIQEGFVRQMAERLQ
Ga0209669_108333	Ga0209669_1083333	F075483	MIELLAVQAITTAALAAVVIKLRRELWPAVAVAGPQNLGFWIRSVDVMALSGPQFDVDKIVVRVRWTLTEELFLIHKLRIYDVAIHPYRRHHYVRWKAWMQGDDRYECEVEKPRGLARLYNKAIDVFCKEKEPPKEVIILPSKVRKRRYKRMLRQLREARRNSAEKPT
Ga0209669_108383	Ga0209669_1083832	F013155	MELYQVVVIAIALANLAVTVWLLRLLIPLWRYLQKVVFVVDEYDFNRLISQFLNGEKPMSETIHIKTTENKEEGYKEIIITRAYKRPLDPREIQENFVRQMAERLQ
Ga0209669_108856	Ga0209669_1088562	F021443	MKYMLNNKKLTFEFGHPYPPYVTCNNDSYYQINEILSFAVIDLAFKIISQQERKSIVLKKRKSIIHLLNYIDILNFNSNKFEITFPLENKYKALLMYNLFLYRSSHQERYYNDLHKNNLKVIENKNSCIIELKYDYSSRIQPKNVNLTTMLMRILAKKEIDTDLNGIIFYCVFLM
Ga0209669_110223	Ga0209669_1102232	F075483	MIELLVVQTITNLALAAVVIKLRRELWPMIAGADPPGSGGVGFWIRSIDVLLVEMPLLRVAKSVTRVRWLFSEELHLTYRLRVYDVAMRPSSRVFYKEWKAWMQGDDRYKCEVEKPRGLARLYTKAIDVFCKEKEPPKEVVILPSRWRKRRYKQSK
Ga0209669_110548	Ga0209669_1105481	F021443	MKCLLNNGKLSFRFRDPYRIDYVTCYNYDYSYQINGILSFAIMDLVFKIIKQQERKSIILRKRKPIIHLLNYIDMLNFNSNSNKLAITFPLENKYKAQLIFNLYLHRSSYQRRYFKDLYKNNLKVIERENSCIIELEDDYASRIQPKNLNLTTMLMHILEKKEIDLIDVNGLIFYCVFLM
Ga0209669_110865	Ga0209669_1108651	F038745	MDKAVMAVCGELMQISLTFSAYYPLCLDGPSCAYAEAVERLIRRAASARDAEELIKVMEGRVKLEELSLPPPALKALAEELGPEPRWLDALAASFFRLYLGVYRRRRVDGRDVFLALCFWAQKKRREDPWNPLWRAAELKPDRLYTEEEAREALKINEALFRRLWRRALAGDKAYGFQLILAALSLMAAPPRSV
Ga0209669_111371	Ga0209669_1113712	F075483	MIELLAVQAVTTLALAFFVIKLRRELYPMIATAGPVHAGFWIRSIDVMVLAAPQLEVAKTVIKIRRLLEEELFLKYSLKFYDVAMHPTSQHHYRMWKAWMQGDDRYKCEVEKPRGLSRLYNKAVEVFCREKKEEPPKEVIILPSKVRKRRYKRMLRQLREARRNSAEKPT
Ga0209669_111616	Ga0209669_1116161	F021443	MKCLLNSGKLTLIFSDPYLIDYVTCCNYDYNYYQTNGILSFAIMDLVFKIVSQEKVKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFSLKNKYKVQLIYNLYLYRSSHRRRYYEDLYKNNLKVIERENLCIIELDDDYPNRIQPKNVNLVTMLTHILEKKEIDLIDVNGLIFYCVFL
Ga0209669_112466	Ga0209669_1124661	F021443	NEILSFAVMDLVLKIINQQKRKSIILKKRKPIIHLLNYIDILNFNFNSNKFVIAFSLENEYKRSLIFNLCLYRRRYKDFYKDNLKVIELKNLCIIRFERDYATRIQPKNSNLATMLMYILDKEEIDMIDANGIIFYCIFLM
Ga0209669_112524	Ga0209669_1125242	F021443	YNDSYYQINEILSFAIIDLVFKIVNQQKRKSIVLKKRKPIIHLLNYIDILNFNFNSNKFEITFPLENEYEMLLIFNLFLYRSSHQERYYNDLHKNNLEVIEHKNSCIIRLKYDGSDIIQPRNLNLATMLMRILKKEEIDVDLNGMIFYCIFLM
Ga0209669_112678	Ga0209669_1126781	F021443	MKCMLNNEKLTFKFAHPYPPYVTCYNYDYSYYQINGILSFAVIDLVFKIVNQQERKSIILKKRKPIIHLLNYIDILNFNSNSNKLDITFPLENEYEPLLIYNLYLHRGLHRERYYKDLHKNNLKVIEHKNLCIIKLEYDCSTRIQPKNVNLATMLIHILEQKEIDTDLNG
Ga0209669_114597	Ga0209669_1145971	F021443	MKYLLDDERLTFRFGPSYVTCYNYDYSYQINGILSFAIIDLVFKIINQQKRKSIVLKKRKPIIHLLNYIDTLNFNSNSSKFNITFRLENKYKTPLIYNLYLHRSSHRRSYYASFYKDSLSVIERENLCIIKLEDDYPSRIQPKNVNL
Ga0209669_114824	Ga0209669_1148241	F021443	YVTCYNDNCYQINEILSFVIMDLVFKIINQQKRKSIILKKRKSIIHLLNYIDVLNFNLNSNKFNITFPLENEYELRLIFNLYLYRSSHRERYYKNLCKNNLKIIEHENSCIIRPESDSSTRIQPKNVNLTTMLMRILKKEEIDIDLNGIIFYCIFLM