Scaffold Ga0209669

Basic Information
Taxon OID	3300025345 Open in IMG/M
Scaffold ID	Ga0209669_101891 Open in IMG/M
Source Dataset Name	Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Ga0209669_101891 Open in IMG/M

Source Dataset Name

Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	7691
Total Scaffold Genes	21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	19 (90.48%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	6 (100.00%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

7691

Total Scaffold Genes

21 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

19 (90.48%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

6 (100.00%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Ecosystem

Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location
Location Name	Yellowstone National Park, Wyoming, USA
Coordinates	Lat. (^o)	44.376	Long. (^o)	-110.69	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

Yellowstone National Park, Wyoming, USA

Coordinates

Lat. (^o)

44.376

Long. (^o)

-110.69

Alt. (m)

Depth (m)

Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F086364	Metagenome	111	N
F088087	Metagenome	109	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0209669_10189110	F088087	GAGG	MKASDGSVWTPVTVSSAPCEVCKRKSRSVVYECTEGKWAGVRVVACPEHAEKAIEQFIAGGEE
Ga0209669_10189114	F092976	GGAGG	MTVQEILHWKQELRRVRQEFLQVWQQCPRCGAKWADIAWDAESDHEFLLVECRNRHLFRVDEEFWLFDCDDHSDAGVYAPSEEVSVHAG
Ga0209669_1018915	F086364	AGGAGG	MEREKIIAALETAFAEISGAEYEDEPVTFAEFLESFAKFRDPDFPVYWIPYTIEEAVESLTDRKFGWHEDVLKDEWSYTGEFGFVCVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRLVQQA
Ga0209669_1018916	F069506	GGAGG	MQLAQVPYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDDPEFPNDIPELIMRTVEKIVGRPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALTAA
Ga0209669_1018917	F100012	AGGAGG	MDKEKVLQALREAQAEYNIEDLDRFIKQAWEEVNILDAQIVAELTERAVEILLDQDFLWAHIIESEDCEEWIPDGWYSFIAVHPETGQCLTFLKDPVYSWESRISFSARIRSADDAVDAVTGLAELIEQNLKSRAVA
Ga0209669_1018919	F080678	GGAGG	MFVRKVDAKTTPISEVYDDWERIWMGEKEIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISARKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0209669_101891

Overview

Ecosystem & Geography

Associated Families

Sequences