Scaffold Ga0209669_100028

Overview

Basic Information

• Taxon OID: 3300025345
• Scaffold ID: Ga0209669_100028
• Source Dataset Name: Thermal spring microbial communities from Yellowstone National Park, Wyoming, USA - Perpetual Spouter A (PS_A) MetaG (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 91010
• Total Scaffold Genes: 108
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 97 (89.81%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (87.50%)
• Associated Families: 8

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Thermal Spring → Saline, Thermophilic Phototrophic And Chemotrophic Mat Microbial Communities From Various Locations In Usa And Mexico

Source Dataset Sampling Location

• Location Name: Yellowstone National Park, Wyoming, USA
• Coordinates
  • Lat. (^o): 44.376
  • Long. (^o): -110.69

Associated Families

Family	Category	Number of Sequences	3D Structure?
F063403	Metagenome / Metatranscriptome	129	N
F069506	Metagenome	124	N
F080678	Metagenome	115	N
F084856	Metagenome / Metatranscriptome	112	N
F086364	Metagenome	111	N
F092976	Metagenome	106	Y
F100012	Metagenome	103	N
F104114	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209669_10002814	F063403	AGGAGG	MEQSFDRQEALRALRVAIRSVRRTPIRIPFGDDERFFIEIRIPRFAERLDLQMAAELFLGGYESSERLLRSLPTIITAFRLPAEDDDGNFVQAIYNAEPLPDMPVINLTPTDLFSDDSAFNATPALMTVIITTLMTLSGRTQAVAAGVNALLELFPGTNQNSTDLLEQGSSGMPGDQ
Ga0209669_10002826	F084856	N/A	MERGDAMFDLSNLMIVTHLYTKEHAEALSLTLSEWRKSAPSSQIIVGYYQSRFQPSDFSNLMQDDAVQFVPVSNSSYGAAYNTLLERTIGKPILILAPYAVPKEWFIGANGSLLKWFESYAIIGRYKQPRILVSDAILMPLVAPIIVELGRLQMDCIAVREDVPRSVGYHEWWFGSILVRARPGAFLLYNALAAGYPVLTLSSNCNPVRYVKPETQTDRKSSKPYGRR
Ga0209669_10002857	F092976	GGAGG	MTVQEILHWKQELRRVMQEFLQVWQKCPKCGAKWADIAWDAESDHESLLVECRSGHLFRVDEQFWLFDYDDTGVYAPSETAMAEVSAHAG
Ga0209669_10002862	F080678	GGAGG	MFAKKVDAKTTPIAEVYDNWEKIWMGEREIRRFLAYTGLSAPPYNLRVEHFLKFPFLRGISAGKFMRKLQKLGVTWSFNRDVVRRGVLQAVGYKWRDIEEFEHMRVFGRKEVSAHAGI
Ga0209669_10002865	F100012	AGGAGG	MDREKVLQALKEAQAEYDIKDLDRFVRTAWEEGDALQAQFVAEMIERAVEILFERHFLWVHIVESEDCELWLPDGWYSFVAVHPETGQCLTFLNDPVYSWKSASFRARIRSADDAVDAVMRLVELIEQNLKSRAVE
Ga0209669_10002866	F069506	GGAGG	MELEQLTYTEEQIKQAIEEVWQELLQEADAENYSLEEYLEDYRKYWDEPDFPNDIPELIMRTVEKIVGSPLSWYCELVRDPAGFTGEYSFVVVDPKTQKCLTYREHTFDGVNVHRFINVAGTVVNYEDIVRLVTKLLNQIQSALADA
Ga0209669_10002867	F086364	AGGAGG	MEREEIIAALETAFAEISGAEYEDEPETFAEFLESFKKFRDPDFPVYWIPYTIEEAVELLTDRKFGWHEDPLKDEWSYTGEFSFICVDPETLKCLTAERSNGSCTVSVVFPILNIDDAVQAVEYFLRLVQRA
Ga0209669_10002871	F104114	AGGAGG	MERLRLWLSLTQDEKFAAAERELKNAILDIHEDFEEEWSLSRSVEDFAPDGLAEIVIQTVEALLGLQWRLEWDYGADADDMVLSSGATTYWFKVSDPETGYVLTHKTSGMTGERLRYFKLIETFRDAVQAVVDLADIIAKKLPVVRSQVSLIKEVK