Scaffold Ga0208138_104017

Overview

Basic Information

• Taxon OID: 3300025343
• Scaffold ID: Ga0208138_104017
• Source Dataset Name: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1214
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 1
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (100.00%)
• Associated Families: 1

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake Enrichment → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Rauer Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.8244
  • Long. (^o): 77.8344
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006730	Metagenome	366	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208138_1040172	F006730	GGA	MARETTSLFDQRVYVQATPPQDTRDGIIWVDTSLADKPTKVYSADTQSFVAVGVADYSQLENRIIGTEVDEYMDGTLGQVESKGFQTPTNYASTDVTEYGVGDSGTFTDGLENYVGYFIDSYEYEIYISLDGSNPANLSFTPSGGLTGVNGLNIPTDPEDTITHSEENRKTVSLSDSANFDPIQVTESDPFSFSYDILANNVASYANATHTVEYTATFNVVTNIPHNHGFNYAN