Sample 3300025343

Overview

Basic Information
IMG/M Taxon OID	3300025343 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114820 \| Gp0116319 \| Ga0208138
Sample Name	Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	N
Use Policy	Open

Dataset Contents
Total Genome Size	44259044
Sequencing Scaffolds	13
Novel Protein Genes	14
Associated Families	7

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. BV1	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2
Not Available	8

Ecosystem and Geography

Ecosystem Assignment (GOLD)
Name	Saline Lake Microbial Communities From Various Lakes In Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake Enrichment → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → saline lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Location Information
Location	Rauer Lake, Antarctica
Coordinates	Lat. (^o)	-68.8244	Long. (^o)	77.8344	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Family	Category	Number of Sequences	3D Structure?
F003128	Metagenome	506	Y
F006730	Metagenome	366	Y
F011984	Metagenome	285	Y
F047394	Metagenome	150	N
F059487	Metagenome	134	Y
F100063	Metagenome	103	N
F102170	Metagenome	102	N

Family

Category

Number of Sequences

3D Structure?

F003128

Metagenome

506

F006730

Metagenome

366

F011984

Metagenome

285

F047394

Metagenome

150

F059487

Metagenome

134

F100063

Metagenome

103

F102170

Metagenome

102

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208138_100998	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. BV1	8343	Open in IMG/M
Ga0208138_101631	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales	4568	Open in IMG/M
Ga0208138_101697	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	4344	Open in IMG/M
Ga0208138_102324	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales	2827	Open in IMG/M
Ga0208138_102458	Not Available	2575	Open in IMG/M
Ga0208138_103815	Not Available	1308	Open in IMG/M
Ga0208138_104017	Not Available	1214	Open in IMG/M
Ga0208138_104269	Not Available	1114	Open in IMG/M
Ga0208138_104336	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1088	Open in IMG/M
Ga0208138_105038	Not Available	877	Open in IMG/M
Ga0208138_106099	Not Available	674	Open in IMG/M
Ga0208138_106929	Not Available	577	Open in IMG/M
Ga0208138_107380	Not Available	533	Open in IMG/M

Scaffold

Taxonomy

Length

IMG/M Link

Ga0208138_100998

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → unclassified Halorubrum → Halorubrum sp. BV1

8343

Open in IMG/M

Ga0208138_101631

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales

4568

Open in IMG/M

Ga0208138_101697

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria

4344

Open in IMG/M

Ga0208138_102324

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales

2827

Open in IMG/M

Ga0208138_102458

Not Available

2575

Open in IMG/M

Ga0208138_103815

Not Available

1308

Open in IMG/M

Ga0208138_104017

Not Available

1214

Open in IMG/M

Ga0208138_104269

Not Available

1114

Open in IMG/M

Ga0208138_104336

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria

1088

Open in IMG/M

Ga0208138_105038

Not Available

877

Open in IMG/M

Ga0208138_106099

Not Available

674

Open in IMG/M

Ga0208138_106929

Not Available

577

Open in IMG/M

Ga0208138_107380

Not Available

533

Open in IMG/M

Scaffold ID	Protein ID	Family	Sequence
Ga0208138_100998	Ga0208138_1009989	F011984	MRPIICDCCQIRIDERWAGPALVVKVHNGVDTDVAGDHCVDCAGDISDAIRSVIDDNDRSDSNE
Ga0208138_101631	Ga0208138_1016316	F003128	MKIEVSASEIKSEKKADDRGRVTLGSEYAGKTVTVAVLEVEDK
Ga0208138_101697	Ga0208138_1016971	F003128	MQIELSASEIKAAKKADDRGRVTLGSEFAGKTVTVAVLDVEDE
Ga0208138_101697	Ga0208138_1016976	F011984	MRPIICDACQIRIDDSWAGPAIEVKVHNGVDSDVSGDYCVDCAGDIADAIRSVIEDEA
Ga0208138_102324	Ga0208138_1023241	F003128	MQIEVSASEIKPAKKADDRGRITLGSEFARETVTVAVLEVEDEDDVEEVST
Ga0208138_102458	Ga0208138_1024582	F059487	MGDPQDFEPTNPIDRFVDRVVIRSDCPVEPCASDSWVKMRAVAVAYLITIPGLYMMNQGFESVGLIVAVSNMLIAINIMSTRFNQRIEHGHTCGRSVIDANNRSDSNE
Ga0208138_103815	Ga0208138_1038153	F102170	MSDDDETVIVMTKGRVYHTDETCKRITDRAREWDLDEALNDGRYECGHCQADENLGSKHHGEHLATKLSKADPDEVAPTEFDRERASVSLAWFVAVWLAIMAASTFTGVMLYFSGVLL
Ga0208138_104017	Ga0208138_1040172	F006730	MARETTSLFDQRVYVQATPPQDTRDGIIWVDTSLADKPTKVYSADTQSFVAVGVADYSQLENRIIGTEVDEYMDGTLGQVESKGFQTPTNYASTDVTEYGVGDSGTFTDGLENYVGYFIDSYEYEIYISLDGSNPANLSFTPSGGLTGVNGLNIPTDPEDTITHSEENRKTVSLSDSANFDPIQVTESDPFSFSYDILANNVASYANATHTVEYTATFNVVTNIPHNHGFNYAN
Ga0208138_104269	Ga0208138_1042692	F100063	MSETCEVCGQFTGQTESFDLWIRGLDRRGEGDRIEMDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNDTPDGELRYVVMIRDEIETDSDANTVQLHPITGNYLPESIDGYVFGKITTESTEP
Ga0208138_104336	Ga0208138_1043362	F003128	MQIEVSASEIKSDKKADDRGRVTLGSEFAGETVTVAVLEVEDE
Ga0208138_105038	Ga0208138_1050382	F047394	MAANTQPTETRAQTTNGSFQTDVSALQEMTERAVEILDSHGEPVTISRLVGTVVRLGARDEYRFETVVRVAQQYIDEECGGAGQ
Ga0208138_106099	Ga0208138_1060992	F003128	MQIEVSASEIKSEKKADDRGRVTLGSEYAGKTVTVAVLEVDVEEPPE
Ga0208138_106929	Ga0208138_1069291	F003128	MQIDVSASDIKSEKMADNRGRVTLGSEYAGKTVTVAVLEVADE
Ga0208138_107380	Ga0208138_1073801	F100063	DLWIRGLDRRGEGDRIEIDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTSDGELRYVVMIRDEIETDSDTEEVELDANTVQLHPITGNYLPESIDGYVWRILEPDNDD

Scaffold ID

Protein ID

Family

Sequence

Ga0208138_100998

Ga0208138_1009989

F011984

MRPIICDCCQIRIDERWAGPALVVKVHNGVDTDVAGDHCVDCAGDISDAIRSVIDDNDRSDSNE

Ga0208138_101631

Ga0208138_1016316

F003128

MKIEVSASEIKSEKKADDRGRVTLGSEYAGKTVTVAVLEVEDK

Ga0208138_101697

Ga0208138_1016971

F003128

MQIELSASEIKAAKKADDRGRVTLGSEFAGKTVTVAVLDVEDE

Ga0208138_101697

Ga0208138_1016976

F011984

MRPIICDACQIRIDDSWAGPAIEVKVHNGVDSDVSGDYCVDCAGDIADAIRSVIEDEA

Ga0208138_102324

Ga0208138_1023241

F003128

MQIEVSASEIKPAKKADDRGRITLGSEFARETVTVAVLEVEDEDDVEEVST

Ga0208138_102458

Ga0208138_1024582

F059487

MGDPQDFEPTNPIDRFVDRVVIRSDCPVEPCASDSWVKMRAVAVAYLITIPGLYMMNQGFESVGLIVAVSNMLIAINIMSTRFNQRIEHGHTCGRSVIDANNRSDSNE

Ga0208138_103815

Ga0208138_1038153

F102170

MSDDDETVIVMTKGRVYHTDETCKRITDRAREWDLDEALNDGRYECGHCQADENLGSKHHGEHLATKLSKADPDEVAPTEFDRERASVSLAWFVAVWLAIMAASTFTGVMLYFSGVLL

Ga0208138_104017

Ga0208138_1040172

F006730

MARETTSLFDQRVYVQATPPQDTRDGIIWVDTSLADKPTKVYSADTQSFVAVGVADYSQLENRIIGTEVDEYMDGTLGQVESKGFQTPTNYASTDVTEYGVGDSGTFTDGLENYVGYFIDSYEYEIYISLDGSNPANLSFTPSGGLTGVNGLNIPTDPEDTITHSEENRKTVSLSDSANFDPIQVTESDPFSFSYDILANNVASYANATHTVEYTATFNVVTNIPHNHGFNYAN

Ga0208138_104269

Ga0208138_1042692

F100063

MSETCEVCGQFTGQTESFDLWIRGLDRRGEGDRIEMDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNDTPDGELRYVVMIRDEIETDSDANTVQLHPITGNYLPESIDGYVFGKITTESTEP

Ga0208138_104336

Ga0208138_1043362

F003128

MQIEVSASEIKSDKKADDRGRVTLGSEFAGETVTVAVLEVEDE

Ga0208138_105038

Ga0208138_1050382

F047394

MAANTQPTETRAQTTNGSFQTDVSALQEMTERAVEILDSHGEPVTISRLVGTVVRLGARDEYRFETVVRVAQQYIDEECGGAGQ

Ga0208138_106099

Ga0208138_1060992

F003128

MQIEVSASEIKSEKKADDRGRVTLGSEYAGKTVTVAVLEVDVEEPPE

Ga0208138_106929

Ga0208138_1069291

F003128

MQIDVSASDIKSEKMADNRGRVTLGSEYAGKTVTVAVLEVADE

Ga0208138_107380

Ga0208138_1073801

F100063

DLWIRGLDRRGEGDRIEIDVSGVSVGECCGLGVLQGPDETRVDRSYQRYLNGTSDGELRYVVMIRDEIETDSDTEEVELDANTVQLHPITGNYLPESIDGYVWRILEPDNDD

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025343: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome Rauer3 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences