Scaffold Ga0208283_11337

Overview

Basic Information

• Taxon OID: 3300025342
• Scaffold ID: Ga0208283_11337
• Source Dataset Name: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome Rauer1 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2776
• Total Scaffold Genes: 7
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location

• Location Name: Rauer Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.8136
  • Long. (^o): 77.9341
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F030942	Metagenome	184	N
F046096	Metagenome	152	N
F076657	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208283_113371	F046096	N/A	CDDNMAQSIMQAASNPESVHKGKKQSESFTSYVTSRTVGAAVTVGALVVGGGAVLLAASKATSTSSNAADSARTTIGEWV
Ga0208283_113374	F076657	GGAGG	MEWNFYQNSKVEVTSKVFPAARADKHTSTKANEEFSFSNIAVPQGSKISVYPAADNTGGLYFIDPETGTKAPLKSGKSFAWTNFQNGTFELSDDSDTAYALAEVDE
Ga0208283_113376	F030942	AGGTGG	MSHAVLKNENDRIIQIQKNGEIVWDDEDYIQRPKIGEPTAQMLRDAENIQDIKQYLARVHKIDLSGGS