Sample 3300025342

Basic Information
IMG/M Taxon OID	3300025342 Open in IMG/M
GOLD Reference (Study \| Sequencing Project \| Analysis Project)	Gs0114820 \| Gp0116318 \| Ga0208283
Sample Name	Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome Rauer1 (SPAdes)
Sequencing Status	Permanent Draft
Sequencing Center	DOE Joint Genome Institute (JGI)
Published?	Y
Use Policy	Open

Basic Information

IMG/M Taxon OID

GOLD Reference
(Study | Sequencing Project | Analysis Project)

Gs0114820 | Gp0116318 | Ga0208283

Sample Name

Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome Rauer1 (SPAdes)

Sequencing Status

Permanent Draft

Sequencing Center

DOE Joint Genome Institute (JGI)

Published?

Use Policy

Open

Dataset Contents
Total Genome Size	27650198
Sequencing Scaffolds	25
Novel Protein Genes	41
Associated Families	25

Dataset Contents

Total Genome Size

27650198

Sequencing Scaffolds

Novel Protein Genes

Associated Families

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	3
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Haloterrigena → Haloterrigena salifodinae	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	4
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36	1
Not Available	11
All Organisms → Viruses → Predicted Viral	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloquadratum → unclassified Haloquadratum → Haloquadratum sp. J07HQX50	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	1

Dataset Phylogeny

Taxonomy Groups

Number of Scaffolds

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Haloterrigena → Haloterrigena salifodinae

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36

Not Available

All Organisms → Viruses → Predicted Viral

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloquadratum → unclassified Haloquadratum → Haloquadratum sp. J07HQX50

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum

All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales

Ecosystem Assignment (GOLD)
Name	Saline Lake Microbial Communities From Various Lakes In Antarctica
Type	Environmental
Taxonomy	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Ecosystem Assignment (GOLD)

Name

Saline Lake Microbial Communities From Various Lakes In Antarctica

Type

Environmental

Taxonomy

Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments
Environment Ontology (ENVO)	aquatic biome → saline lake → lake water
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Hypersaline (saline)

Alternative Ecosystem Assignments

Environment Ontology (ENVO)

aquatic biome → saline lake → lake water

Earth Microbiome Project Ontology (EMPO)

Free-living → Saline → Hypersaline (saline)

Location Information
Location	Rauer Lake, Antarctica
Coordinates	Lat. (^o)	-68.8136	Long. (^o)	77.9341	Alt. (m)	N/A	Depth (m)	0
Location on Map

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Location Information

Location

Rauer Lake, Antarctica

Coordinates

Lat. (^o)

-68.8136

Long. (^o)

77.9341

Alt. (m)

N/A

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F003128	Metagenome	506	Y
F006455	Metagenome	373	Y
F011984	Metagenome	285	Y
F027372	Metagenome	195	Y
F027696	Metagenome	194	N
F030942	Metagenome	184	N
F030943	Metagenome	184	Y
F038482	Metagenome	166	Y
F046096	Metagenome	152	N
F046097	Metagenome	152	Y
F047394	Metagenome	150	N
F051583	Metagenome	144	N
F058558	Metagenome	135	Y
F059487	Metagenome	134	Y
F063209	Metagenome	130	N
F065262	Metagenome	128	Y
F068284	Metagenome	125	Y
F069544	Metagenome	123	N
F072888	Metagenome	121	N
F074233	Metagenome	119	N
F076657	Metagenome	118	N
F083454	Metagenome	113	N
F084898	Metagenome	112	N
F085171	Metagenome	111	N
F102170	Metagenome	102	N

Family

Scaffold	Taxonomy	Length	IMG/M Link
Ga0208283_10227	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	21266	Open in IMG/M
Ga0208283_10480	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Haloterrigena → Haloterrigena salifodinae	10108	Open in IMG/M
Ga0208283_10482	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	10067	Open in IMG/M
Ga0208283_10862	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36	5032	Open in IMG/M
Ga0208283_10970	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	4399	Open in IMG/M
Ga0208283_11018	Not Available	4120	Open in IMG/M
Ga0208283_11045	Not Available	3973	Open in IMG/M
Ga0208283_11048	Not Available	3956	Open in IMG/M
Ga0208283_11130	Not Available	3547	Open in IMG/M
Ga0208283_11337	All Organisms → Viruses → Predicted Viral	2776	Open in IMG/M
Ga0208283_11451	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2483	Open in IMG/M
Ga0208283_11615	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2117	Open in IMG/M
Ga0208283_11793	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Haloferacaceae → Haloquadratum → unclassified Haloquadratum → Haloquadratum sp. J07HQX50	1838	Open in IMG/M
Ga0208283_11866	Not Available	1733	Open in IMG/M
Ga0208283_11911	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1688	Open in IMG/M
Ga0208283_11928	Not Available	1671	Open in IMG/M
Ga0208283_11958	Not Available	1636	Open in IMG/M
Ga0208283_11975	Not Available	1613	Open in IMG/M
Ga0208283_12081	Not Available	1507	Open in IMG/M
Ga0208283_12103	Not Available	1492	Open in IMG/M
Ga0208283_12547	All Organisms → Viruses → Predicted Viral	1121	Open in IMG/M
Ga0208283_12668	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum	1050	Open in IMG/M
Ga0208283_13321	Not Available	754	Open in IMG/M
Ga0208283_13479	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	712	Open in IMG/M
Ga0208283_14146	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Halobacteriales	561	Open in IMG/M

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208283_10227	Ga0208283_1022716	F030943	MTNQIGDDDIEQLVTEAINVETVPSVGPSLVGDLLTGELDSWRVVICKIEKDGDDLLVYGENGHLIKRVNTDVWTTSALSENEVKDLAKIADTINSAIASEHGEL
Ga0208283_10227	Ga0208283_102274	F006455	MNQQIKPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVKLPENYYQDNRVIGCIEVGVELEDAADSAREWMEQNNRQ
Ga0208283_10227	Ga0208283_102279	F051583	MTPHVPLTVGRPAPEGTKPNMDYTNPEDVANIDEPTHQQEIGLLSGLIDGTFVCVNHRGFLVNRTDNGSIELSRDGEVLGGRYYVTENNFAGLIEWLNAKVALYGETA
Ga0208283_10480	Ga0208283_1048013	F084898	MSVQYKNSKFKKVTQKDIVSTLETLHGIGQDTAQDVVSLVDAREYEDLLNDARTDLKANVKRELLKSQINRESVFAVLLYQAQKNNGEEIILYKKGE
Ga0208283_10482	Ga0208283_104827	F074233	MNVTKHKISKFSKIIGIALVAMLAFGGLSGAVSAQEDIGDINVTVEDNGTAVNTQNMTLMDASDNTEVEVLETDSDGFVSFTDISYGEYYLSYTDSENVTHESATFQTQTGVSLVDWDVDANTLTLEDGSGNLIEEYVGTQDDFVVTDVLSEESNDASTLIGYAGVVAGTVITIFVLIISLILARKILRI
Ga0208283_10862	Ga0208283_108621	F046097	MAAQQVPAVEIEAQNVSVDREGDMYSLRIIDTNSKVHRLEAGALTLNDYGFSTSGCEISEYGKVVTVKRPETGSRYIHLSTE
Ga0208283_10862	Ga0208283_108623	F027372	MDEIIVSSTEALHEDYANLKSQTSLGYVPRGLAGIMVNGCNIICGNCATDEDLADNDNGAIFADSEWDHPAPVCEDCEKPLNVNLLVHKTYDPELRFRLRMTEELGGFADTDCFTIEEICEKAAERAAEIGRDYAPTDMFAPDEHFEIPTDSAQYIDNIAPQLQQLAGYAPYDSTPTDIGYEIHKEDVLPAFREAYHSEAINREM
Ga0208283_10862	Ga0208283_108624	F065262	MSDKDDAPAVNGVKLDSVSGVANAFAYLDKPYNMGDIAVRSSEDLVIIQSRGAHFGHMDALLQAQKQGHISIQQITAETTAAGDPCLTIEVVGRDD
Ga0208283_10862	Ga0208283_108625	F027372	MDEIIVSSTEALHEDYANLKSQTPLGHVPYGLAGIVINDCDIICGNCATDEDLADNDNGAIFGNSEWDYPAPVCEDCEKPLNVNLLVHKTYDPELRFRLRMTEELGGFADTDCFTIEEICEKAAERAAEIGRDYAPTDMFESGEHFEIPTDSAQYANIIAPQLRQLAGYEDGAGKGTYNATPTDIGYEIHKEDVLPAFREAYYSEAVNREI
Ga0208283_10970	Ga0208283_109708	F058558	MNINDKFRHRAFKAVVKTDDHDVAEHSIIAGLSWVGVNDGEYRMLWTRDHFNTSGHNHVSVIFIAPTEYMMDFPTLVERGNATSISEVELKSVGA
Ga0208283_11018	Ga0208283_110185	F063209	MSEAQLLKEIKQLKKNQKNIEKKLDKAIGNANGQPDAEDQIEVWDDEEGLPADIRIAKVIKEAKKAGDNKLRRIQVGKVEEILGRKRTRTLEIMRKLDRKHENLTYKNLGGNKGSYLYYK
Ga0208283_11018	Ga0208283_110189	F046096	MAQSIMQAASNPESVHKGKKQSESFTSYVTSRTVGAAVTVGALVVGGGAVLLALRKATSTSSNAADSAKTTIGEWI
Ga0208283_11045	Ga0208283_110453	F046097	MSDRLIPLPALLSIAMAAQQVPAVEIEAQNVSVDREGDMYSLRIIDTNSKVHRLEAGALTLNDYGFSTSGCEISEYGKVVTVKRVEAGSRYIHLSTE
Ga0208283_11045	Ga0208283_110454	F030943	MPTIHVIAMSNQIEANEIEQLETAPSVDSGIVGDLLIGELDSWHVGICKIEKDGGDLLVCGETGQVVERVDTDVWTTSAIIEDTEVKSLAEIADTINSAIESECGDL
Ga0208283_11045	Ga0208283_110455	F038482	MSEKLAKADELCDELAETLSLNPDTVEITIKIPQQPWGCTTTVTDEQIAQMAAGELFRLDGGTQSRIGRD
Ga0208283_11048	Ga0208283_1104810	F046096	MAQSIMKAASNPESVHKGKKQSESFTSYVTSRTVGAAVTVGALVVGGGAVLYAANMATSTSNVVDTAKTTIGEWV
Ga0208283_11048	Ga0208283_110486	F063209	MSEAQLLKEIKQLKINQKKIEKNQKNIEKKLDKAIGNANGQPDAEDHIEVWNDQQDSPGDIRIAKVIKQARKPERGGLTRIQVGEIEQIVGRKRTRTLEIMRELDRKHENLKYENLGGNKGSYLYYTG
Ga0208283_11130	Ga0208283_111302	F076657	MLWDFYQNSKVEVTSKVFPAARADEYTSTESNDEFSFSNIAVPEGSKISVYPANDNTGSLYFIDPKTGTKAPLKSGKAFAWTNFQNGTFELSEDSDTAYALAEVEQ
Ga0208283_11130	Ga0208283_111304	F030942	MSHAVLKDENDRIVQIQKNGEIVWDDGDYIQRPKIGEPTAQMLRDAETIQDIKQYLARIHKIDLSSGSQ
Ga0208283_11337	Ga0208283_113371	F046096	CDDNMAQSIMQAASNPESVHKGKKQSESFTSYVTSRTVGAAVTVGALVVGGGAVLLAASKATSTSSNAADSARTTIGEWV
Ga0208283_11337	Ga0208283_113374	F076657	MEWNFYQNSKVEVTSKVFPAARADKHTSTKANEEFSFSNIAVPQGSKISVYPAADNTGGLYFIDPETGTKAPLKSGKSFAWTNFQNGTFELSDDSDTAYALAEVDE
Ga0208283_11337	Ga0208283_113376	F030942	MSHAVLKNENDRIIQIQKNGEIVWDDEDYIQRPKIGEPTAQMLRDAENIQDIKQYLARVHKIDLSGGS
Ga0208283_11451	Ga0208283_114514	F076657	MEWNFYQNSKVEVTSKVFPAARADKYTSTESNDEFSFSNIGVPEGSKISVYPAGDNTGGLYFIDPETGTKAPLKSGKAFAWTNFQNGTFELSDNSDTAYAMAEVDQ
Ga0208283_11615	Ga0208283_116153	F059487	MNPIDRFVDRVVIRSACPVEPCASQSWVKMRVGAVAFLATMPGLYMMNQGFETVGWIVAVANMLIAINIISTRVNQRIEHGHTCGRTDISVNSEDQQ
Ga0208283_11615	Ga0208283_116154	F011984	MRPIICDCCQIRIDEDWTGPAIVVKVHNGVDSDVAGDYCIDCVGDISDAIRSVIEDTTGVTRREKDE
Ga0208283_11615	Ga0208283_116155	F085171	MNKNKHTDLDGLIDLDSRSLIKLGNSAVVSIPSAEDLGIIGNIEELDAAVSVRLVESNQIVIEARVDLSNVDLGDIDLTLD
Ga0208283_11793	Ga0208283_117933	F030942	MSHAVLKNENDRIVQIQKNGEVVWDDEDYIQRRKIGEPTAQMLRDAETIQDIKQYLARVHKIDLSGGSQ
Ga0208283_11793	Ga0208283_117935	F076657	MEWNFYQNSKVEVTSKVFPGARADKYTSRESNDEFSFSNIAVPEGSKISVYPAGDNTGSLYFKDPKTGTKAPLKSGKAFAWTNFQNGTFELSDDSDTAYAIAEVEQ
Ga0208283_11866	Ga0208283_118663	F003128	MQIGVSASDIKSEKKADDRGRVTLGSELAGKTVTVAVLEVKDE
Ga0208283_11911	Ga0208283_119113	F047394	MTANTQPTETRAQTTNGSFQTDVSALQEMTERAVEILDSHGEPVTIARLVGTVVRLGARDEYRFETIVRVAQQYIDEE
Ga0208283_11928	Ga0208283_119281	F011984	MRPIICDCCQIRIDDSWAGPAIEVKVHNGVDTDVAGDHCVDCAGDIADAIRSVIDANNRSDSNE
Ga0208283_11958	Ga0208283_119582	F102170	MSDDDETVIVMTKGHVYHTDATCHRITDRAREWDLDEALNDGRYECGHCQADENLGSKHHGERLATKLSKADPDEVAPTEFDRERASVSLAWFVAVWLAIMAASTFTGVMLYFAGVLL
Ga0208283_11975	Ga0208283_119752	F006455	MNQQVKPPAGWTEIEPEFDHQRQTFQRRRDGLVLAIEREGRSSYNIVTLPENYYQDNQVIDYVELGLKPENAAEPAREWMEQNNRQ
Ga0208283_11975	Ga0208283_119753	F068284	KAAERAAEIGRDYAPTDMFEPDEHYEIPTDSAKYSNIIAPQLQQLAGYAPYDSTPTDIGYHIHKEDVLPAFREAYHSEAINREI
Ga0208283_12081	Ga0208283_120814	F059487	MSDLGNCAPTNPIDRFVDRVVIRSACPVEPCASDSWVKMRAVAVAFLITIPGLYMVNQGFESTGLIVATANMLIAINIISTRVNQQIEHGHTCGRTEISANSEDQQ
Ga0208283_12103	Ga0208283_121031	F083454	MSNKTTIGLKVSHERNARIERKVDDAGYQSRQAYIRDLIDDDLGGFDTTVESTTTEHTPDDRRDAEIYEALLDYISLVGWTRFGRF
Ga0208283_12547	Ga0208283_125471	F063209	MSEAQLLKEIKQLKINQKKIEKNQKNIEKKLDKAIGNANGQPDAEDQIEVWDDEEGLPADIRIAKVIKEAKKAGDNKLRRIQVGKVEEILGRKRTRTLEIMRKLDRKHE
Ga0208283_12668	Ga0208283_126682	F047394	MTASTQPTETRAQTTNGSFQTDVSALQEMTERAVEILDSHGEPVTIARLVGTVVRLGARDEYRFETIVRVAQQYIDEECGGADALTTNHGGRQ
Ga0208283_13321	Ga0208283_133211	F069544	QVYVDEIREEGVSALKNYADEFYYRKDKFRAIDAWFESLGYTNLVAFKNGVRKAFGYNERIMKEVIHEYSKEYNRLEFNPKIFNEVKPEIIKEDGKLDKYVLEDVYNVLYEKDNHLILEFISQNYKAYNTNSLRLRLIELGYIEEKTNREFVSYIKKHLDYHGIVYESVDSTNIVFKK
Ga0208283_13479	Ga0208283_134791	F072888	IEREVNGENELTEYENVSKVINIPSMGKIKLTYPDGETDMSPCGQIVNISEHEPSDNTSGNGGE
Ga0208283_14146	Ga0208283_141462	F027696	DERVIDFDIAANTDYEIQSCVIVDEDDRVVEAVVRFGRVEERPELGIGKSILYPAWANMVSEATNVEAVEGDLSDFSHIVPHLRVRRENVEKYGLETLSLDAFVTVVAELADLTEDILRGDDKTIDSQIDAYL

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

3300025342: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome Rauer1 (SPAdes)

Overview

Ecosystem and Geography

Associated Families

Associated Scaffolds

Sequences