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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300025342 Open in IMG/M |
| Scaffold ID | Ga0208283_10862 Open in IMG/M |
| Source Dataset Name | Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 1 Metagenome Rauer1 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 5032 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natrinema → unclassified Natrinema → Natrinema sp. DC36 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Rauer Lake, Antarctica | |||||||
| Coordinates | Lat. (o) | -68.8136 | Long. (o) | 77.9341 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F027372 | Metagenome | 195 | Y |
| F046097 | Metagenome | 152 | Y |
| F065262 | Metagenome | 128 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208283_108621 | F046097 | N/A | MAAQQVPAVEIEAQNVSVDREGDMYSLRIIDTNSKVHRLEAGALTLNDYGFSTSGCEISEYGKVVTVKRPETGSRYIHLSTE |
| Ga0208283_108623 | F027372 | N/A | MDEIIVSSTEALHEDYANLKSQTSLGYVPRGLAGIMVNGCNIICGNCATDEDLADNDNGAIFADSEWDHPAPVCEDCEKPLNVNLLVHKTYDPELRFRLRMTEELGGFADTDCFTIEEICEKAAERAAEIGRDYAPTDMFAPDEHFEIPTDSAQYIDNIAPQLQQLAGYAPYDSTPTDIGYEIHKEDVLPAFREAYHSEAINREM |
| Ga0208283_108624 | F065262 | AGG | MSDKDDAPAVNGVKLDSVSGVANAFAYLDKPYNMGDIAVRSSEDLVIIQSRGAHFGHMDALLQAQKQGHISIQQITAETTAAGDPCLTIEVVGRDD |
| Ga0208283_108625 | F027372 | N/A | MDEIIVSSTEALHEDYANLKSQTPLGHVPYGLAGIVINDCDIICGNCATDEDLADNDNGAIFGNSEWDYPAPVCEDCEKPLNVNLLVHKTYDPELRFRLRMTEELGGFADTDCFTIEEICEKAAERAAEIGRDYAPTDMFESGEHFEIPTDSAQYANIIAPQLRQLAGYEDGAGKGTYNATPTDIGYEIHKEDVLPAFREAYYSEAVNREI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |