NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208137_10774

Scaffold Ga0208137_10774


Overview

Basic Information
Taxon OID3300025333 Open in IMG/M
Scaffold IDGa0208137_10774 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome VIRRA3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)633
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameRauer Lake, Antarctica
CoordinatesLat. (o)-68.8244Long. (o)77.8344Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006455Metagenome373Y
F058558Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0208137_107741F058558GGAGMNINDKFQHRAFKAVVKTDDHDVAENAITAGLSWVGVNDDEYRMLWTRDHFNTSGHKQVAAIFIVPTEYMGDLPTLVERGNATSINEVELQSVDA
Ga0208137_107742F006455GGAMNQQIKPPAGWTEIEPEFDYQRQTFQRRRDGLVVSVEQELHATYNVVTLPENYHQDNQVIDCIEIGVEPEDAAESAREWMEQNNRQ

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