3300025333: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome VIRRA3 (SPAdes)

Overview

Basic Information

• IMG/M Taxon OID: 3300025333
• GOLD Reference (Study | Sequencing Project | Analysis Project): Gs0114820 | Gp0116316 | Ga0208137
• Sample Name: Saline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome VIRRA3 (SPAdes)
• Sequencing Status: Permanent Draft
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Published?: N
• Use Policy: Open

Dataset Contents

• Total Genome Size: 5268032
• Sequencing Scaffolds: 14
• Novel Protein Genes: 27
• Associated Families: 17

Dataset Phylogeny
Taxonomy Groups	Number of Scaffolds
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	2
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum lipolyticum	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2
All Organisms → Viruses → Predicted Viral	1
Not Available	6
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales	1
All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum halophilum	1

Ecosystem and Geography

Ecosystem Assignment (GOLD)

• Name: Saline Lake Microbial Communities From Various Lakes In Antarctica
• Type: Environmental
• Taxonomy: Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Alternative Ecosystem Assignments

• Environment Ontology (ENVO): aquatic biome → saline lake → lake water
• Earth Microbiome Project Ontology (EMPO): Free-living → Saline → Hypersaline (saline)

Location Information

• Location: Rauer Lake, Antarctica
• Coordinates
  • Lat. (^o): -68.8244
  • Long. (^o): 77.8344
  • Alt. (m): N/A
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002325	Metagenome	571	Y
F003128	Metagenome	506	Y
F006455	Metagenome	373	Y
F012537	Metagenome	280	Y
F020827	Metagenome	222	Y
F030943	Metagenome	184	Y
F038482	Metagenome	166	Y
F046097	Metagenome	152	Y
F047394	Metagenome	150	N
F051583	Metagenome	144	N
F055308	Metagenome	139	Y
F058558	Metagenome	135	Y
F065262	Metagenome	128	Y
F069544	Metagenome	123	N
F072888	Metagenome	121	N
F085171	Metagenome	111	N
F104109	Metagenome	101	N

Associated Scaffolds

Scaffold	Taxonomy	Length
Ga0208137_10017	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	71997
Ga0208137_10018	All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus	70466
Ga0208137_10145	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales → Halorubraceae → Halorubrum → Halorubrum lipolyticum	2827
Ga0208137_10164	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	2397
Ga0208137_10228	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria	1833
Ga0208137_10349	All Organisms → Viruses → Predicted Viral	1250
Ga0208137_10415	Not Available	1044
Ga0208137_10430	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Haloferacales	1008
Ga0208137_10432	All Organisms → cellular organisms → Archaea → Euryarchaeota → Stenosarchaea group → Halobacteria → Natrialbales → Natrialbaceae → Natronorubrum → Natronorubrum halophilum	1002
Ga0208137_10503	Not Available	893
Ga0208137_10774	Not Available	633
Ga0208137_10791	Not Available	623
Ga0208137_10944	Not Available	549
Ga0208137_10958	Not Available	542

Sequences

Scaffold ID	Protein ID	Family	Sequence
Ga0208137_10017	Ga0208137_10017104	F006455	MNQQVKPPAGWTEIEPEFDHQRQTFQRRRDGLVLAIEREGRSSYNVVTLPENYYQDNQVIDYVEVGLKPENAAEPAREWMEQNNRQ
Ga0208137_10017	Ga0208137_10017106	F020827	MKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDRIEVEHYLSGGKMITKVTVTASDVLPVVKNIEPVEKPDHL
Ga0208137_10017	Ga0208137_10017107	F006455	MNQQVKPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVKLPENYYQNNRVIGCIEVGVELEDAAETAHEWMEQNNRQ
Ga0208137_10017	Ga0208137_1001712	F030943	MSNQIEADEIEQHENTPSVGPSLVGDLLTGELDSWRVVICKIEKDGDDLLVRGENGHLIKRVNTDVWTTSALSETEVKDLAKIADTINSAIASEEGDL
Ga0208137_10017	Ga0208137_1001748	F104109	MQELLNYVPEVIVIGNIEFAVAGAALALGFPKAARWVVERRTSTDLNGDGHVGKPPGDTSESQVEDAADRTGDK
Ga0208137_10017	Ga0208137_100176	F051583	MTPHVPLTVGRPAPEGTKPNMDYTNPEDVANIDEPTHQQEIGLLSGLIDGKFVCVNYRGFLVNRTDNGSIELSRDGEVLGGRYYVTEHNFAGLVEWLNAKVALYGETA
Ga0208137_10017	Ga0208137_1001763	F072888	MTFDVAIEREVNGENELTDYENVSKAINIPSMEKIKLTYPDGETDMSPCGQIVSISEHEASDSEAN
Ga0208137_10018	Ga0208137_1001810	F046097	MAAQQVPAVEIEAQNVLVDREGDMYSLRIIDTNSKVHHLEAGALTLNDYGFSTSGCEISEYGKVVTVKRPETGSRYIHLSTE
Ga0208137_10018	Ga0208137_10018104	F020827	MKHDIAGWYEIGQQWKLWKDGQLRDFYINHIHVLESDDSDRIEVEHYLSGGKMITKLTVTASDVLPVVKNIEPVEKPDHL
Ga0208137_10018	Ga0208137_10018105	F006455	MNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIEREGRSSYNIVTLPENYYQDDQVIDYVELGVKPENAAEPAREWMEQNNRQ
Ga0208137_10018	Ga0208137_1001813	F065262	MSDKDDAPAVNGVKLDSVSGVANAFAYLDKPYNMGDIAVRSSEDLVIIQSRGAHFGHMDALLQAQKQGHISIQQITAGTTAAGDPCLTIEVVGKDD
Ga0208137_10018	Ga0208137_1001817	F038482	MSEKLTKADDLCNELAETLSLNPDTVEITIKIPQQPWGCTTTVTDEEIAQMAAGELFRLDGDSQARIEQA
Ga0208137_10018	Ga0208137_100183	F051583	MTLHVPLTVGRSAPEGTQPNMDYTNPEDVANIDEPTRQQEIGLLSGLIDGKFVCVNHRGFLVNRTDNGSIELSRDGEVLGGRYYVTENNFAGLIEWLNAKAALYGETA
Ga0208137_10018	Ga0208137_1001870	F072888	MTLDVAIEREVNGENELTEYENVSKVINIPSMGKIKLTYPDGETDMSPCGQIVSISEHEASDSEAN
Ga0208137_10145	Ga0208137_101457	F003128	MQIEVSASEIKSSKKADDRGRVTLGSEFAGKTVTVAVLEVEDD
Ga0208137_10164	Ga0208137_101646	F003128	MQIEVSASEIKSEMKADDRGRVTLGSEYGGETVTVAVLEVKDEDGGESA
Ga0208137_10228	Ga0208137_102284	F085171	MNKNKHTDLDGLIDLDSRSLIKLGNSAVVSIPSADDLGIIGNIDELDAAVSVRVVESNQIVIEARVDLSNVELGDIDLTVD
Ga0208137_10349	Ga0208137_103491	F020827	RMKHDIAGWYEIGQRWKLWKDGQLRDFYIDHIHVLESDDSDTIEVEHYLSDGTMITKLTVTAFDVLPVVKNIEPVEKPDQL
Ga0208137_10415	Ga0208137_104152	F002325	MVLNATQRAVLSSGIADTIPNNTVAHYDASQLSLNDGETVSVWPDQQGDNDLDIQTGSPTYVESGINGNPAIEFHGDGLEVTGLSVTQPNTTYVVFEYHSGFDGGRVLSGVSERQLTAWAYNNWGVYAGDNLFGSNDIGIQQMTTVFDGANSILRENGVETAVGDAGTKDLGGLSVGYDSWGYNYNDQARFYADAYVSEIVVVDSGSVDLDFENQLLGKWGITA
Ga0208137_10430	Ga0208137_104303	F003128	MQIEVSAADIKSQKKADDRGRITLGSEHAGETVTVAVLEVKDD
Ga0208137_10432	Ga0208137_104322	F047394	MTESTQPTETRAQTTNGSFQTDVSALQETTERAVEILDSHGEQVTIARLVGTVVRLGARDEYRFETIVRVAQQYIDEECGGADQ
Ga0208137_10503	Ga0208137_105031	F012537	AVVGGVAVGYATRYVQDKYLGDDFDETAYDQAAADEVHAAIRENALEKSYYDDSMLTNLNNVLSNSKQVAYGDARVAAIEQMNLGNTEQDAIDAGVEVIDDFFAVQQENLLEHYSFQAENLCRQSNTVSNTGGISQTDIFYSPDVDDGKPLFGLDLQTASITMVDGTNYTYSTFGFLYENDAGGTSSVATSSISNRIRLQVKPVSTGSKETFFEVNRFDDTLSEISTKHSETVSEITNFVNTVYPEYQAGDISLQDIVRPSELAAKASDSEENPISGADLAVMGLEADTQSKTTVRL
Ga0208137_10774	Ga0208137_107741	F058558	MNINDKFQHRAFKAVVKTDDHDVAENAITAGLSWVGVNDDEYRMLWTRDHFNTSGHKQVAAIFIVPTEYMGDLPTLVERGNATSINEVELQSVDA
Ga0208137_10774	Ga0208137_107742	F006455	MNQQIKPPAGWTEIEPEFDYQRQTFQRRRDGLVVSVEQELHATYNVVTLPENYHQDNQVIDCIEIGVEPEDAAESAREWMEQNNRQ
Ga0208137_10791	Ga0208137_107913	F003128	MQIEVSASDIKSEKKADDRGRITLGSEYGGETVTVAVLEVEDE
Ga0208137_10944	Ga0208137_109441	F055308	DGTNAKTSSGIGTFPYGFYDFEEFTDGQDIIANDAAFTANNDSWYGDTTPTFTAYNSYAKQGSVGSQFTTDAREGVQYELPQTIDSSTESKWLREFWMKGAESTSTATVHGMSDVVDASNTEENIYGPEDGMTNGGEVRYYDEDGWVSIYSGISPGDWVWIHEEIDFPNNQTYTEVKDAPDG
Ga0208137_10958	Ga0208137_109581	F069544	LGYTNLVAFKNGVRKAFGYNERSMKEVIHEYSKEYNRLEFNPKIFNEVKPDILKDDGQLDKYVLEDVYNVLYEKDNHLILEFISQNYKAYNTNSLRLRLIELGYIEEKTNREFVSYIKKHLDYHGIVYESVDSTNIVFKK