NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208137_10018

Scaffold Ga0208137_10018


Overview

Basic Information
Taxon OID3300025333 Open in IMG/M
Scaffold IDGa0208137_10018 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome VIRRA3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)70466
Total Scaffold Genes106 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)57 (53.77%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Associated Families7

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameRauer Lake, Antarctica
CoordinatesLat. (o)-68.8244Long. (o)77.8344Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006455Metagenome373Y
F020827Metagenome222Y
F038482Metagenome166Y
F046097Metagenome152Y
F051583Metagenome144N
F065262Metagenome128Y
F072888Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0208137_1001810F046097N/AMAAQQVPAVEIEAQNVLVDREGDMYSLRIIDTNSKVHHLEAGALTLNDYGFSTSGCEISEYGKVVTVKRPETGSRYIHLSTE
Ga0208137_10018104F020827GGAGMKHDIAGWYEIGQQWKLWKDGQLRDFYINHIHVLESDDSDRIEVEHYLSGGKMITKLTVTASDVLPVVKNIEPVEKPDHL
Ga0208137_10018105F006455N/AMNQQVKPPAGWTEIEPEFDHQQQTFQRRRDGLVVAIEREGRSSYNIVTLPENYYQDDQVIDYVELGVKPENAAEPAREWMEQNNRQ
Ga0208137_1001813F065262AGGMSDKDDAPAVNGVKLDSVSGVANAFAYLDKPYNMGDIAVRSSEDLVIIQSRGAHFGHMDALLQAQKQGHISIQQITAGTTAAGDPCLTIEVVGKDD
Ga0208137_1001817F038482N/AMSEKLTKADDLCNELAETLSLNPDTVEITIKIPQQPWGCTTTVTDEEIAQMAAGELFRLDGDSQARIEQA
Ga0208137_100183F051583GGCGGMTLHVPLTVGRSAPEGTQPNMDYTNPEDVANIDEPTRQQEIGLLSGLIDGKFVCVNHRGFLVNRTDNGSIELSRDGEVLGGRYYVTENNFAGLIEWLNAKAALYGETA
Ga0208137_1001870F072888GAGMTLDVAIEREVNGENELTEYENVSKVINIPSMGKIKLTYPDGETDMSPCGQIVSISEHEASDSEAN
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