NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208137_10017

Scaffold Ga0208137_10017


Overview

Basic Information
Taxon OID3300025333 Open in IMG/M
Scaffold IDGa0208137_10017 Open in IMG/M
Source Dataset NameSaline lake microbial communities from Rauer Lake, Antarctica, in enrichment culture - Antartic Rauer Lake 3 Metagenome VIRRA3 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)71997
Total Scaffold Genes108 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)62 (57.41%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Associated Families6

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales → Myoviridae → Haloferacalesvirus(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameRauer Lake, Antarctica
CoordinatesLat. (o)-68.8244Long. (o)77.8344Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006455Metagenome373Y
F020827Metagenome222Y
F030943Metagenome184Y
F051583Metagenome144N
F072888Metagenome121N
F104109Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0208137_10017104F006455GGAMNQQVKPPAGWTEIEPEFDHQRQTFQRRRDGLVLAIEREGRSSYNVVTLPENYYQDNQVIDYVEVGLKPENAAEPAREWMEQNNRQ
Ga0208137_10017106F020827GGAGMKHDIAGWYEIGQQWKLWKDGQLRDFYIDHIHVLESDDSDRIEVEHYLSGGKMITKVTVTASDVLPVVKNIEPVEKPDHL
Ga0208137_10017107F006455N/AMNQQVKPPAGWTEIEPEFEFQRQTFQRRRDGLVVSVEQELHAAYNVVKLPENYYQNNRVIGCIEVGVELEDAAETAHEWMEQNNRQ
Ga0208137_1001712F030943N/AMSNQIEADEIEQHENTPSVGPSLVGDLLTGELDSWRVVICKIEKDGDDLLVRGENGHLIKRVNTDVWTTSALSETEVKDLAKIADTINSAIASEEGDL
Ga0208137_1001748F104109GGAGMQELLNYVPEVIVIGNIEFAVAGAALALGFPKAARWVVERRTSTDLNGDGHVGKPPGDTSESQVEDAADRTGDK
Ga0208137_100176F051583GGCGGMTPHVPLTVGRPAPEGTKPNMDYTNPEDVANIDEPTHQQEIGLLSGLIDGKFVCVNYRGFLVNRTDNGSIELSRDGEVLGGRYYVTEHNFAGLVEWLNAKVALYGETA
Ga0208137_1001763F072888GGAMTFDVAIEREVNGENELTDYENVSKAINIPSMEKIKLTYPDGETDMSPCGQIVSISEHEASDSEAN
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