Scaffold Ga0208684_1088861

Overview

Basic Information

• Taxon OID: 3300025305
• Scaffold ID: Ga0208684_1088861
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 784
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 40.24
  • Long. (^o): 2.3
  • Depth (m): 1876

Associated Families

Family	Category	Number of Sequences	3D Structure?
F094540	Metagenome	106	Y
F100966	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208684_10888612	F100966	AGGAG	MALSTLVSNPKYKLFTVIPTVQATPDYGAGDVLFAPTEIPNFFQDAGASCIIKSITIIDKQVVATHAFTLYFTNSSTALGTINATADAVVGVLEEIQATIPIVDGDWIAGGGAGSVDLANVCTISNPAVDGIGSVLQGSNWAGGNRTKGIHIVGIAGETMNVASTSDLIIKIGVEY
Ga0208684_10888613	F094540	N/A	VTGQNRVIRKKGDLMGQGKGDWLRINLTDEQYKKNYDKIFNKENINGS