Metagenome Family F094540

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F094540
Family Type	Metagenome
Number of Sequences	106
Average Sequence Length	52 residues
Representative Sequence	MRSPNENTVTGQNRVIRKKGDLNGTGKGDWLRINLIDEQYKKNYDKIFKK
Number of Associated Samples	58
Number of Associated Scaffolds	106

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	20.75 %
% of genes near scaffold ends (potentially truncated)	22.64 %
% of genes from short scaffolds (< 2000 bps)	86.79 %
Associated GOLD sequencing projects	43
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (61.321 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (63.208 % of family members)
Environment Ontology (ENVO)	Unclassified (96.226 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (97.170 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 24.36% β-sheet: 2.56% Coil/Unstructured: 73.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 106 Family Scaffolds
PF00959	Phage_lysozyme	19.81
PF03237	Terminase_6N	3.77
PF13884	Peptidase_S74	0.94
PF13385	Laminin_G_3	0.94

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
All Organisms	root	All Organisms	38.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Viruses	superkingdom	All Organisms → Viruses	34.91 %
cellular organisms	root	All Organisms → cellular organisms	3.77 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
unclassified viruses	clade	All Organisms → Viruses → unclassified viruses	30.19 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
unclassified DNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses	30.19 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
unclassified dsDNA viruses	no rank	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses	30.19 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	3.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	61.32 %
Prokaryotic dsDNA virus sp.	species	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	30.19 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3.77 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	2.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2236876008\|none_p519275	Not Available	535	Open in IMG/M
3300001450\|JGI24006J15134_10025337	Not Available	2668	Open in IMG/M
3300002518\|JGI25134J35505_10030274	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1533	Open in IMG/M
3300002518\|JGI25134J35505_10137520	Not Available	505	Open in IMG/M
3300006736\|Ga0098033_1005654	Not Available	4273	Open in IMG/M
3300006736\|Ga0098033_1070854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1009	Open in IMG/M
3300006736\|Ga0098033_1071917	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1000	Open in IMG/M
3300006736\|Ga0098033_1085278	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	905	Open in IMG/M
3300006736\|Ga0098033_1139542	Not Available	681	Open in IMG/M
3300006738\|Ga0098035_1042914	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1675	Open in IMG/M
3300006738\|Ga0098035_1056796	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1419	Open in IMG/M
3300006738\|Ga0098035_1153202	Not Available	783	Open in IMG/M
3300006738\|Ga0098035_1249874	Not Available	584	Open in IMG/M
3300006750\|Ga0098058_1024743	Not Available	1752	Open in IMG/M
3300006750\|Ga0098058_1071301	Not Available	959	Open in IMG/M
3300006750\|Ga0098058_1134551	Not Available	657	Open in IMG/M
3300006750\|Ga0098058_1140497	Not Available	641	Open in IMG/M
3300006750\|Ga0098058_1206842	Not Available	509	Open in IMG/M
3300006751\|Ga0098040_1214075	Not Available	561	Open in IMG/M
3300006751\|Ga0098040_1229553	Not Available	539	Open in IMG/M
3300006753\|Ga0098039_1034679	Not Available	1789	Open in IMG/M
3300006753\|Ga0098039_1218508	Not Available	644	Open in IMG/M
3300006753\|Ga0098039_1238680	Not Available	612	Open in IMG/M
3300006754\|Ga0098044_1005942	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	5945	Open in IMG/M
3300006754\|Ga0098044_1107626	Not Available	1139	Open in IMG/M
3300006754\|Ga0098044_1277718	Not Available	644	Open in IMG/M
3300006789\|Ga0098054_1093727	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1126	Open in IMG/M
3300006924\|Ga0098051_1197709	Not Available	526	Open in IMG/M
3300006926\|Ga0098057_1116948	Not Available	650	Open in IMG/M
3300006926\|Ga0098057_1189892	Not Available	501	Open in IMG/M
3300006927\|Ga0098034_1046057	Not Available	1293	Open in IMG/M
3300006927\|Ga0098034_1200616	Not Available	556	Open in IMG/M
3300007765\|Ga0105010_1081977	Not Available	1082	Open in IMG/M
3300007963\|Ga0110931_1209449	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	582	Open in IMG/M
3300008050\|Ga0098052_1302424	Not Available	604	Open in IMG/M
3300008216\|Ga0114898_1022089	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2200	Open in IMG/M
3300008217\|Ga0114899_1074956	Not Available	1167	Open in IMG/M
3300008217\|Ga0114899_1093332	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1021	Open in IMG/M
3300008218\|Ga0114904_1103844	Not Available	689	Open in IMG/M
3300008218\|Ga0114904_1131310	Not Available	594	Open in IMG/M
3300008219\|Ga0114905_1165021	Not Available	730	Open in IMG/M
3300008220\|Ga0114910_1055641	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1256	Open in IMG/M
3300008220\|Ga0114910_1132443	Not Available	720	Open in IMG/M
3300008220\|Ga0114910_1140004	Not Available	695	Open in IMG/M
3300009370\|Ga0118716_1018298	All Organisms → Viruses	5520	Open in IMG/M
3300009413\|Ga0114902_1063838	Not Available	1036	Open in IMG/M
3300009418\|Ga0114908_1070866	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1208	Open in IMG/M
3300009603\|Ga0114911_1138493	Not Available	688	Open in IMG/M
3300009605\|Ga0114906_1065889	Not Available	1349	Open in IMG/M
3300009605\|Ga0114906_1196366	Not Available	677	Open in IMG/M
3300009605\|Ga0114906_1279088	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	536	Open in IMG/M
3300009622\|Ga0105173_1069456	Not Available	616	Open in IMG/M
3300009786\|Ga0114999_10405719	Not Available	1071	Open in IMG/M
3300009794\|Ga0105189_1005363	Not Available	1191	Open in IMG/M
3300009794\|Ga0105189_1007316	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1019	Open in IMG/M
3300010151\|Ga0098061_1011643	All Organisms → Viruses → Predicted Viral	3772	Open in IMG/M
3300010151\|Ga0098061_1084925	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1191	Open in IMG/M
3300010151\|Ga0098061_1085222	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1188	Open in IMG/M
3300010151\|Ga0098061_1248116	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	621	Open in IMG/M
3300010155\|Ga0098047_10037529	Not Available	1927	Open in IMG/M
3300010155\|Ga0098047_10038840	Not Available	1891	Open in IMG/M
3300010155\|Ga0098047_10121081	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1018	Open in IMG/M
3300010155\|Ga0098047_10152505	Not Available	893	Open in IMG/M
3300010155\|Ga0098047_10162642	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	862	Open in IMG/M
3300010155\|Ga0098047_10191717	Not Available	785	Open in IMG/M
3300010155\|Ga0098047_10320451	Not Available	584	Open in IMG/M
3300010155\|Ga0098047_10345102	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	560	Open in IMG/M
3300010155\|Ga0098047_10358884	Not Available	547	Open in IMG/M
3300017703\|Ga0181367_1052925	Not Available	714	Open in IMG/M
3300017744\|Ga0181397_1029339	All Organisms → Viruses → Predicted Viral	1585	Open in IMG/M
3300017775\|Ga0181432_1251715	Not Available	557	Open in IMG/M
3300017775\|Ga0181432_1308397	Not Available	502	Open in IMG/M
3300021980\|Ga0232637_10449715	Not Available	632	Open in IMG/M
3300022227\|Ga0187827_10088173	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2333	Open in IMG/M
3300022227\|Ga0187827_10152973	Not Available	1624	Open in IMG/M
3300025072\|Ga0208920_1011507	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1972	Open in IMG/M
3300025072\|Ga0208920_1047734	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	859	Open in IMG/M
3300025078\|Ga0208668_1006573	Not Available	2665	Open in IMG/M
3300025082\|Ga0208156_1010242	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2294	Open in IMG/M
3300025082\|Ga0208156_1061128	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300025096\|Ga0208011_1119345	Not Available	546	Open in IMG/M
3300025097\|Ga0208010_1123436	Not Available	519	Open in IMG/M
3300025109\|Ga0208553_1050572	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1028	Open in IMG/M
3300025118\|Ga0208790_1038633	Not Available	1545	Open in IMG/M
3300025118\|Ga0208790_1202980	Not Available	521	Open in IMG/M
3300025122\|Ga0209434_1076666	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	987	Open in IMG/M
3300025122\|Ga0209434_1102806	Not Available	816	Open in IMG/M
3300025131\|Ga0209128_1026073	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2451	Open in IMG/M
3300025131\|Ga0209128_1026502	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2423	Open in IMG/M
3300025131\|Ga0209128_1150350	Not Available	697	Open in IMG/M
3300025132\|Ga0209232_1224503	Not Available	558	Open in IMG/M
3300025141\|Ga0209756_1023484	All Organisms → Viruses	3493	Open in IMG/M
3300025141\|Ga0209756_1193268	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	784	Open in IMG/M
3300025168\|Ga0209337_1002356	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	13720	Open in IMG/M
3300025247\|Ga0207880_1012113	All Organisms → Viruses → Predicted Viral	1431	Open in IMG/M
3300025267\|Ga0208179_1035907	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1202	Open in IMG/M
3300025274\|Ga0208183_1071474	Not Available	663	Open in IMG/M
3300025282\|Ga0208030_1052190	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	1157	Open in IMG/M
3300025282\|Ga0208030_1125265	Not Available	624	Open in IMG/M
3300025300\|Ga0208181_1105221	Not Available	538	Open in IMG/M
3300025301\|Ga0208450_1128381	Not Available	533	Open in IMG/M
3300025305\|Ga0208684_1088861	Not Available	784	Open in IMG/M
3300026134\|Ga0208815_1006277	Not Available	1846	Open in IMG/M
3300026134\|Ga0208815_1017029	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	968	Open in IMG/M
3300032278\|Ga0310345_10139939	All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp.	2152	Open in IMG/M
3300032820\|Ga0310342_102203856	Not Available	659	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	93.40%
Strait	Environmental → Aquatic → Marine → Strait	2.83%
Coastal	Environmental → Aquatic → Marine → Coastal	1.89%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	0.94%
Hydrothermal Vents	Environmental → Aquatic → Marine → Hydrothermal Vents	0.94%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	93.40%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	2.83%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	1.89%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	0.94%
Diffuse Flow	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow	0.94%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	63.21%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	21.70%
Marine Oceanic	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic	4.72%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	3.77%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	2.83%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	1.89%
Marine Estuarine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine Estuarine	0.94%
Hydrothermal Vent Fluids	Environmental → Aquatic → Marine → Hydrothermal Vents → Diffuse Flow → Hydrothermal Vent Fluids	0.94%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2236876008	Marine microbial communities from Columbia River, CM, sample from Cape Meares, GS311-3LG-Deep1200	Environmental	Open in IMG/M
3300001450	Marine viral communities from the Pacific Ocean - LP-53	Environmental	Open in IMG/M
3300002518	Marine viral communities from the Pacific Ocean - ETNP_6_100	Environmental	Open in IMG/M
3300006736	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG	Environmental	Open in IMG/M
3300006738	Marine viral communities from the Subarctic Pacific Ocean - 3_ETSP_OMZ_AT15126 metaG	Environmental	Open in IMG/M
3300006750	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG	Environmental	Open in IMG/M
3300006751	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG	Environmental	Open in IMG/M
3300006753	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG	Environmental	Open in IMG/M
3300006754	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG	Environmental	Open in IMG/M
3300006789	Marine viral communities from the Subarctic Pacific Ocean - 16_ETSP_OMZ_AT15313 metaG	Environmental	Open in IMG/M
3300006924	Marine viral communities from the Subarctic Pacific Ocean - 14B_ETSP_OMZ_AT15311_CsCl metaG	Environmental	Open in IMG/M
3300006926	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG	Environmental	Open in IMG/M
3300006927	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG	Environmental	Open in IMG/M
3300007765	Marine water column microbial communities of the permanently stratified Cariaco Basin, Venezuela, November cruise - 247m, 2.7-0.2um, replicate b	Environmental	Open in IMG/M
3300007963	Marine viral communities from the Subarctic Pacific Ocean - 4_ETSP_OMZ_AT15127 metaG (version 2)	Environmental	Open in IMG/M
3300008050	Marine viral communities from the Subarctic Pacific Ocean - 15_ETSP_OMZ_AT15312 metaG	Environmental	Open in IMG/M
3300008216	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar	Environmental	Open in IMG/M
3300008217	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215	Environmental	Open in IMG/M
3300008218	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6	Environmental	Open in IMG/M
3300008219	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05	Environmental	Open in IMG/M
3300008220	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908	Environmental	Open in IMG/M
3300009370	Combined Assembly of Gp0127930, Gp0127931	Environmental	Open in IMG/M
3300009413	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12	Environmental	Open in IMG/M
3300009418	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s17	Environmental	Open in IMG/M
3300009603	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_904	Environmental	Open in IMG/M
3300009605	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9	Environmental	Open in IMG/M
3300009622	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155	Environmental	Open in IMG/M
3300009786	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_126	Environmental	Open in IMG/M
3300009794	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245	Environmental	Open in IMG/M
3300010151	Marine viral communities from the Subarctic Pacific Ocean - 22_ETSP_OMZ_AT15343 metaG	Environmental	Open in IMG/M
3300010155	Marine viral communities from the Subarctic Pacific Ocean - 12_ETSP_OMZ_AT15267 metaG	Environmental	Open in IMG/M
3300017703	Marine viral communities from the Subarctic Pacific Ocean - ?Lowphox_02 viral metaG	Environmental	Open in IMG/M
3300017744	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 20 SPOT_SRF_2011-02-23	Environmental	Open in IMG/M
3300017775	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 55 SPOT_SRF_2014-07-17	Environmental	Open in IMG/M
3300021980	Hydrothermal fluids microbial communities from Mariana Back-Arc Basin vent fields, Pacific Ocean - Burke_FS924 _150kmer	Environmental	Open in IMG/M
3300022227	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)	Environmental	Open in IMG/M
3300025072	Marine viral communities from the Subarctic Pacific Ocean - 19_ETSP_OMZ_AT15317 metaG (SPAdes)	Environmental	Open in IMG/M
3300025078	Marine viral communities from the Subarctic Pacific Ocean - 18_ETSP_OMZAT15316 metaG (SPAdes)	Environmental	Open in IMG/M
3300025082	Marine viral communities from the Subarctic Pacific Ocean - 1_ETSP_OMZ_AT15124 metaG (SPAdes)	Environmental	Open in IMG/M
3300025096	Marine viral communities from the Subarctic Pacific Ocean - 7_ETSP_OMZ_AT15161 metaG (SPAdes)	Environmental	Open in IMG/M
3300025097	Marine viral communities from the Subarctic Pacific Ocean - 2_ETSP_OMZ_AT15125 metaG (SPAdes)	Environmental	Open in IMG/M
3300025109	Marine viral communities from the Subarctic Pacific Ocean - 6_ETSP_OMZ_AT15160 metaG (SPAdes)	Environmental	Open in IMG/M
3300025118	Marine viral communities from the Subarctic Pacific Ocean - 10_ETSP_OMZ_AT15264 metaG (SPAdes)	Environmental	Open in IMG/M
3300025122	Marine viral communities from the Pacific Ocean - ETNP_2_300 (SPAdes)	Environmental	Open in IMG/M
3300025131	Marine viral communities from the Pacific Ocean - ETNP_6_100 (SPAdes)	Environmental	Open in IMG/M
3300025132	Marine viral communities from the Pacific Ocean - ETNP_2_60 (SPAdes)	Environmental	Open in IMG/M
3300025141	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)	Environmental	Open in IMG/M
3300025168	Marine viral communities from the Pacific Ocean - LP-53 (SPAdes)	Environmental	Open in IMG/M
3300025247	Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)	Environmental	Open in IMG/M
3300025267	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_Geostar (SPAdes)	Environmental	Open in IMG/M
3300025274	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_51 (SPAdes)	Environmental	Open in IMG/M
3300025282	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_M9 (SPAdes)	Environmental	Open in IMG/M
3300025300	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s6 (SPAdes)	Environmental	Open in IMG/M
3300025301	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_908 (SPAdes)	Environmental	Open in IMG/M
3300025305	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_b05 (SPAdes)	Environmental	Open in IMG/M
3300026134	Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245 (SPAdes)	Environmental	Open in IMG/M
3300032278	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - HC15-DNA-20-500_MG	Environmental	Open in IMG/M
3300032820	Marine microbial communities from station ALOHA, North Pacific Subtropical Gyre - S1503-DNA-20-500_MG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
none_5192752	2236876008	Marine Estuarine	MKPSYENSVTGQNRVVRKKGDLNGSGKGDWLRINLTDEQYKKNYDKIFKKENINGS
JGI24006J15134_100253373	3300001450	Marine	MENTVTGQNRIIRKTGDLRGAGKGDWLRIPVYDKQYKENYNKIFRKKDNK*
JGI25134J35505_100302743	3300002518	Marine	MRSPNENTATGQNRVIRKKGDLNGQGKGDWLRIGLIDEQYKKNYDRIFKK*
JGI25134J35505_101375202	3300002518	Marine	MRSPSENTVTGQNRVIRKKGDLHGSGKGDWLRIGLIDEQXKKNYDRIFRK*
Ga0098033_10056544	3300006736	Marine	MKPSYENSVTGQNRVVRKKGDLNGVGKGDWLRIDLADEQYKKNYNKIFKKER*
Ga0098033_10708543	3300006736	Marine	MKPSYENTVTGQNRVVRKKGDLMGQGKGDWLRIDLADEQYKKNYDKIFNKENINGS*
Ga0098033_10719172	3300006736	Marine	MRSPSENTVTGQNRVIRKKGDLHGSGKGDWLRIGLIDEQYKKNYDKIFKK*
Ga0098033_10852783	3300006736	Marine	MRNPNENTVTGQNRVIRKKGDLNGSGKGDWLRVGLIDEQYKKNYDRIFKK*
Ga0098033_11395423	3300006736	Marine	MRSPNENTVTGQNRVIRKKGDLNGTGKGDWLRINLIDEQYKKNYDKIFKK*
Ga0098035_10429142	3300006738	Marine	MKPSYENSVTGQNRVVRKKGDLNGVGKGDWLRINLTDEQYKKNYDKIFKKENINGS*
Ga0098035_10567963	3300006738	Marine	MRSPNENTVTGQNRIIRKKGDLTGTGKGDWLRVDLLDEQYKKNYDKIFRKDKED*
Ga0098035_11532023	3300006738	Marine	MRSPNENTVTGQNRVIRKKGDLNGTGKGDWLRINLADEQYKKNYDRIFKK*
Ga0098035_12498741	3300006738	Marine	MKPAYENSITGQNRVIRKKGDLNGSGKGDWLRIGLIDEQYKKNYDKIFQKEK*
Ga0098058_10247434	3300006750	Marine	MKPSYENTTTGQNRVVRKKGDLMGQGKGDWLRIDLADEQYKKNYDKIFNKENINGS
Ga0098058_10713013	3300006750	Marine	MKPSYENTATGQNRVIRKKGDLMGQGKGDWLRINLADEKYKRNYDKIFNKENINGS*
Ga0098058_11345511	3300006750	Marine	MRNPNENTVTGQNRVIRKKGDLTGVGKGDWLRVDLMDEQYKKNYDKIF
Ga0098058_11404971	3300006750	Marine	KEKKEMKPAYENSITGQNRVIRKKGDLNGSGKGDWLRIGLIDEQYKKNYDKIFQKEK*
Ga0098058_12068422	3300006750	Marine	MAANPHENSTTGQYRVIRKKGDLNRNGKGDWLRVGLVDEQYKKNYDKIDWGKKK*
Ga0098040_12140752	3300006751	Marine	MKPSYENSVTGQNRVVRKKGDLSGVGKGDWLRINLTDEQYNKNYDKIFKKENINGS*
Ga0098040_12295532	3300006751	Marine	VRNPNENTVTGQNRVIRKKGDLTGTGKGDWLRVGLIDEQYKENYNKIFHKEEED*
Ga0098039_10346792	3300006753	Marine	MRSPSENTVTGQNRVIRKKGDLHGFGKGDWLRIDLADEQYKKNYDRIFKK*
Ga0098039_12185082	3300006753	Marine	MRNPNENTTTGQNRIIRKKGDLHGSGKGDWLRIGLIDEQYKKNYDKIFKK*
Ga0098039_12386803	3300006753	Marine	MKPSYENTTTGQNRVIRKKGDLMGQGKGDWIRINLADEKYKRNYDKIFNKENINGS*
Ga0098044_10059426	3300006754	Marine	MRNPNENTVTGQNRVIRKKGDLTGVGKGDWLRVDLMDEQYKKNYDKIFRKEK*
Ga0098044_11076262	3300006754	Marine	MKPSYENSITGQNRVIRKKGDLNGTGKGDWLRIGLIDDQYKKNYDKIFQKEK*
Ga0098044_12777183	3300006754	Marine	MKPSYENTTTGQNRVVRKKGDLMGQGKGDWLRIDLADEQYKKNYDKIFNKENIN
Ga0098054_10937273	3300006789	Marine	MRSPSENTVTGQNRVIRKKGDLHGFGKGDWLRIDLADEQYKKNYDKIFKK*
Ga0098051_11977092	3300006924	Marine	MRSKYENTVTGQNRIVRKKGDLTGVGKGDWMRITNLDEKYKKNYDKIDWSK*QRGCNE
Ga0098057_11169482	3300006926	Marine	MKPSYENTVTGQNRVVRKKGDLMGQGKGDWLRINLADEKYKRNYDKIFNKENINGS*
Ga0098057_11898923	3300006926	Marine	MRSPVENTITGQNRIVRKPGDLTGAGKGDWLRIGLVDEQYKKNYDKIFKK*
Ga0098034_10460573	3300006927	Marine	MKPSYENSVTGQNRVVRKKGDLNGVGKGDWLRIDLADEQYKKNYNKIFKKVR*
Ga0098034_12006161	3300006927	Marine	MKPSYENTATGQNRVIRKKGDLMGQGKGDWLRINLTDEQYKKNYDKIFNKENINGS*
Ga0105010_10819773	3300007765	Marine	MRSPSENTVTGQNRVIRKKGDLNGSGKGDWLRIDLSDRRYIKNYNKIFGDKSCQN
Ga0110931_12094492	3300007963	Marine	ATGQNRVIRKKGDLMGQGKGDWLRVGLIDEQYKKNYDRIFKK*
Ga0098052_13024241	3300008050	Marine	MRSPSENTVTGQNRVIRKKGDLHGFGKGDWLRIDLADEQYKKNYDKI
Ga0114898_10220893	3300008216	Deep Ocean	MRSPNENTVTGQNRIIRKKGDLNGSGKGDWLRVGLIDEQYKKNYDKIFHKEKVD*
Ga0114899_10749563	3300008217	Deep Ocean	MKPSYENTTTGQNRVIRKKGDLFGVGKGDWLRIDLADEQYKKNYNKIFKKEK*
Ga0114899_10933321	3300008217	Deep Ocean	VRNPNENTVTGQNRVIRKKGDLNGQGKGDWLRVGLIDEQYKKNYDKIFRKEKED*
Ga0114904_11038442	3300008218	Deep Ocean	MKPSYKNRVTGQNRVIRKKGDLMGQGKGDWLRINLTDEQYKKNYDKIFNKENINGS*
Ga0114904_11313102	3300008218	Deep Ocean	MGRDPNINTTTGQRRIIKKKGDLTGAGKGDWLRIGLVDKEYKKNYDKIFRKEVRIA*
Ga0114905_11650212	3300008219	Deep Ocean	VTGQNRVIRKKGDLMGQGKGDWLRINLTDEQYKKNYDKIFNKENINGS*
Ga0114910_10556412	3300008220	Deep Ocean	VRNPNENTVTGQNRVIRKRGDLTGQGKGDWLRVGIIDEQYKENYNKIFRKEKED*
Ga0114910_11324431	3300008220	Deep Ocean	MKPSYENRVTGQNRVIRKKGDLMGQGKGDWLRINLTDEQYKKNYDKIFNKENINGS*
Ga0114910_11400041	3300008220	Deep Ocean	MKPSYENTVTGQNRVVRKKGDLSGVGKGDWLRINLTDEQYKKNYDKIFKKENIDGS*
Ga0118716_10182983	3300009370	Marine	MKPSYENTATGQNRVVRKKGDLTGQGKGDWLRINLIDEQYKKNYDRIFKK*
Ga0114902_10638382	3300009413	Deep Ocean	MRSPNENTVTGQNRVIRKKGDLMGQGKGDWLRINLTDEQYKKNYDKIFNKENINGS*
Ga0114908_10708663	3300009418	Deep Ocean	MKPSYENRVTGQNRVIRKKGDLMGQGKGDWLRINLTDEQYKKNYDKIFNKEK*
Ga0114911_11384933	3300009603	Deep Ocean	TGQRRIIKKKGDLTGAGKGDWLRIGLVDKEYKKNYDKIFRKEVRIA*
Ga0114906_10658891	3300009605	Deep Ocean	MRGPNENTVTGQNRVIRKKGDLNGQGKGDWLRIGLIDDQYKKNYDKIFKKEKI
Ga0114906_11963662	3300009605	Deep Ocean	MKPSYENSITGQNRVVRKKGDLSGVGKGDWLRINLTDEQYKKNYDRIFKKENINGS*
Ga0114906_12790882	3300009605	Deep Ocean	MKPSYENTITGQNRVIRKKGDLNGSGKGDWLRINLADEQYKKNYNKIFKKEK*
Ga0105173_10694561	3300009622	Marine Oceanic	MRSPVENTITGQNRIVRKPGDLTGTGKGDWLRIGLIDEQYKKNYDKIFKK*
Ga0114999_104057193	3300009786	Marine	MSESVNTVTGQNRVIRKKGDLTGSGKGDWLRIGLVDEQYKKNYD
Ga0105189_10053631	3300009794	Marine Oceanic	MKNTVTGQNRVIRKKGDLMGAGKGDWLRIGVDDKKYKDNYDRIFG
Ga0105189_10073163	3300009794	Marine Oceanic	MRASYENTSTGQNRVVRKKGDLNGAGKGDWLRIDLADEQYKKNYDKIFKK*
Ga0098061_10116437	3300010151	Marine	MRNPNENTVTGQNRVIRKKGDLTGTGKGDWLRVNLLDEQYKKNYDKIFRKDKED*
Ga0098061_10849254	3300010151	Marine	LENTKTGQNRVIRKKSDLTGYGKGDWLRIDLVDEQYKKNYDKIFRKEED*
Ga0098061_10852223	3300010151	Marine	MRSPSENTVTGQNRVIRKKGDLNGSGKGDWLRINLIDEQYKKNYDRIFKK*
Ga0098061_12481162	3300010151	Marine	MSKNSLTGQSRVIRKKGDLTGSGKGDWLRINLADEQYKKNYDRIFKK*
Ga0098047_100375293	3300010155	Marine	MKPAYENSVTGQNRVVRKKGDLNGVGKGDWLRINLTDEQYKKNYDKIFKKENINGS*
Ga0098047_100388406	3300010155	Marine	MSGRNPLENTITGQNRVIRKKGDLTGAGKGDWRRSSVLNENWQKNYDKIFKKKKK*
Ga0098047_101210811	3300010155	Marine	MKPSYENSVTGQNRVVRKKGDLSGSGKGDWLRIDLADEQYKKNYDKIFNKENINGS*
Ga0098047_101525051	3300010155	Marine	MKPSYENTTTGQNRVVRKKGDLNGSGKGDWLRINLADEKYKRNYDKIFNKEK*
Ga0098047_101626423	3300010155	Marine	MRSPSENTATGQNRVIRKKGDLHGFGKGDWLRIGLVDEQYKKNYDKIFKK*
Ga0098047_101917172	3300010155	Marine	MKPSYENTATGQNRVIRKKGDLMGQGKGDWLRINLADEKYKRNYDKIFNKEK*
Ga0098047_103204512	3300010155	Marine	MRSPNENSVTGQNRVIRKKGDLTGAGKGDWLRVDLIDEQYKKNYDRIFKKK*
Ga0098047_103451021	3300010155	Marine	MRNPNENTVTGQNRIVRKKGDLNGSGKGDWLRVGLIDEQYKKNYDRIFKK*
Ga0098047_103588842	3300010155	Marine	MRNPNENTVTGQNRVIRKKGDLTGTGKGDWLRVDLLDEQYKKNYDKIFRKDKED*
Ga0181367_10529252	3300017703	Marine	MRSPSENTVTGQNRVIRKKGDLHGFGKGDWLRIDLLDEQYKKNYDKIFKK
Ga0181397_10293393	3300017744	Seawater	MIDNKNSVTGQNRVVRKKGDLTGAGKGDWLRIPNNDEQYRKNYDKINWND
Ga0181432_12517151	3300017775	Seawater	KEKKEMKPSYENSVTGQNRVVRKKGDLMGQGKGDWLRINLTDEQYKKNYDKIFKKENING
Ga0181432_13083971	3300017775	Seawater	MKPPYENSVTGQNRVIRKKGDLTGQGKGDWLRINLTDEQYKKNYDKIFKKENINGS
Ga0232637_104497151	3300021980	Hydrothermal Vent Fluids	NKEGMRSPVENTTTGQNRVIRKPGDLTGTGKGDWLRINLIDEQYKKNYDKIFKK
Ga0187827_100881734	3300022227	Seawater	MRSPNENTATGQNRVIRKKGDLNGQGKGDWLRIGLIDEQYKKNYDRIFKK
Ga0187827_101529733	3300022227	Seawater	MKPSYENTVTGQNRVVRKKGDLMGQGKGDWLRIDLADEQYKKNYDKIFNKENINGS
Ga0208920_10115074	3300025072	Marine	MRSPSENTVTGQNRVIRKKGDLNGSGKGDWLRINLIDEQYKKNYDKIFKK
Ga0208920_10477342	3300025072	Marine	MRSPNENTVTGQNRVIRKKGDLNGTGKGDWLRINLADEQYKKNYDRIFKK
Ga0208668_10065733	3300025078	Marine	MKPSYENSVTGQNRVVRKKGDLNGVGKGDWLRIDLADEQYKKNYNKIFKKER
Ga0208156_10102423	3300025082	Marine	MRSPSENTVTGQNRVIRKKGDLHGSGKGDWLRIGLIDEQYKKNYDKIFKK
Ga0208156_10611283	3300025082	Marine	MRNPNENTVTGQNRVIRKKGDLNGSGKGDWLRVGLIDEQYKKNYDRIFKK
Ga0208011_11193451	3300025096	Marine	MRSPSENTATGQNRVIRKKGDLHGFGKGDWLRIGLVDEQYKKNYDKIFKK
Ga0208010_11234363	3300025097	Marine	MKPSYENTITGQNRVVRKKGDLMGQGKGDWLRIDLADEQYKKNYDKIFNK
Ga0208553_10505721	3300025109	Marine	MRSPSENTVTGQNRVIRKKGDLHGFGKGDWLRIDLADEQYKKNYDRIFKK
Ga0208790_10386334	3300025118	Marine	MRNPNENTVTGQNRVIRKKGDLTGTGKGDWLRVDLLDEQYKKNYDKIFRKEK
Ga0208790_12029802	3300025118	Marine	MKPSYENTATGQNRVIRKKGDLMGQGKGDWLRINLADEKYKRNYDKIFNKEK
Ga0209434_10766662	3300025122	Marine	MRNPNENTVTGQNRVIRKKGDLTGVGKGDWLRVDLMDEQYKKNYDKIFRKEK
Ga0209434_11028063	3300025122	Marine	MRNPNENTVTGQNRVIRKKGDLNGQGKGDWLRIELIDEQYKKNYDKIFRK
Ga0209128_10260733	3300025131	Marine	MKPSYENTATGQNRVVRKKGDLTGQGKGDWLRINLADEQYKKNYDRIFKK
Ga0209128_10265027	3300025131	Marine	MRSPSENTVTGQNRVIRKKGDLHGSGKGDWLRIGLIDEQYKKNYDRIFRK
Ga0209128_11503503	3300025131	Marine	MRNPNENTTTGQNRIIRKKGDLNGSGKGDWLRIGLIDEQYKKNYDKIFKK
Ga0209232_12245032	3300025132	Marine	MKNTTTGQNRIIRKKGDLTGAGKGDWLRIGLCDEQYKKNYDKIFKKKFKGRS
Ga0209756_10234846	3300025141	Marine	MKPSYENTATGQNRVVRKKGDLTGQGKGDWLRINLADEQYKKNYDKIFKK
Ga0209756_11932683	3300025141	Marine	YENTATGQNRVVRKKGDLTGQGKGDWLRINLADEQYKKNYDRIFKK
Ga0209337_100235622	3300025168	Marine	MENTVTGQNRIIRKTGDLRGAGKGDWLRIPVYDKQYKENYNKIFRKKDNK
Ga0207880_10121136	3300025247	Deep Ocean	ENTTTGQNRIVRKPGDLNGSGKGDWLRVGLIDEQYKKNYDKIFKK
Ga0208179_10359073	3300025267	Deep Ocean	MRSPNENTVTGQNRIIRKKGDLNGSGKGDWLRVGLIDEQYKKNYDKIFHKEKVD
Ga0208183_10714742	3300025274	Deep Ocean	MGRDPNINTTTGQRRIIKKKGDLTGAGKGDWLRIGLVDKEYKKNYDKIFRKEVRIA
Ga0208030_10521903	3300025282	Deep Ocean	VRNPNENTVTGQNRVIRKRGDLTGQGKGDWLRVGIIDEQYKENYNKIFHKEEED
Ga0208030_11252652	3300025282	Deep Ocean	MKPSYENSITGQNRVVRKKGDLSGVGKGDWLRINLTDEQYKKNYDRIFKKENINGS
Ga0208181_11052213	3300025300	Deep Ocean	MKPSYKNRVTGQNRVIRKKGDLMGQGKGDWLRINLTDEQYKKNYDKI
Ga0208450_11283811	3300025301	Deep Ocean	MKPSYENTVTGQNRVVRKKGDLSGVGKGDWLRINLTDEQYKKNYDKIFKKENIDGS
Ga0208684_10888613	3300025305	Deep Ocean	VTGQNRVIRKKGDLMGQGKGDWLRINLTDEQYKKNYDKIFNKENINGS
Ga0208815_10062771	3300026134	Marine Oceanic	MKNTVTGQNRVIRKKGDLMGAGKGDWLRIGVDDKKYKDNYDRIFGKKDILT
Ga0208815_10170293	3300026134	Marine Oceanic	MRASYENTSTGQNRVVRKKGDLNGAGKGDWLRIDLADEQYKKNYDKIFKK
Ga0310345_101399393	3300032278	Seawater	MKPSYENTTTGQNRVIRKKGDLMGQGKGDWLRIDLADEKYKRNYDKIFNKENINGS
Ga0310342_1022038562	3300032820	Seawater	MKPSYENTTTGQNRVIRKKGDLMGQGKGDWLRIDLADEQYKKNYDKIFNKENINGS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F094540

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences