Scaffold Ga0208315_1019271

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1019271
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2159
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 8 (80.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium 4572_77 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F019555	Metagenome / Metatranscriptome	229	Y
F068133	Metagenome / Metatranscriptome	125	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10192714	F068133	AGGAG	MQLAIDVFTDMITSKEIYIIIGAAVIMWIALEWMDR
Ga0208315_10192716	F019555	AGGAG	MFKVILKNKFKERKIDLSIAVKVMYHQKFTGSIQSEHIKWWKRYWIKPIMLEILYPKKGWITLVKIFREGKPSIRVITVATSSSKRELLVHKQLYGEEVQYEQKRKKKLEQFRNKQKNMQTTNIAPNME