Scaffold Ga0208315_1008133

Overview

Basic Information

• Taxon OID: 3300025286
• Scaffold ID: Ga0208315_1008133
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_215 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3855
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (62.50%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 38.09
  • Long. (^o): 11.46
  • Depth (m): 1200

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016063	Metagenome / Metatranscriptome	250	Y
F103553	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208315_10081332	F016063	AGGAGG	MRGDYLESSSGKYFTEYRATSKIDNSAAVTRTLLAAESGMLFIVDMSTVDNDVTLTLPAVSTSAGVYYDFCFMVDSDDDADFIIKTDAAGTDIYGGIITLAANSTIDAFAGISTITVDGSVAQSTEGLKMSFVCDGTNWHLSGHIMTAVGTVHLVGAAGV
Ga0208315_10081338	F103553	N/A	MASNIKYPEDVAVWFIEGDALILLTAVDSSGTARTSTRKKWKAISEAVTDGLLVHFYAEPNKVRN