Scaffold Ga0208048_1005483

Overview

Basic Information

• Taxon OID: 3300025283
• Scaffold ID: Ga0208048_1005483
• Source Dataset Name: Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5334
• Total Scaffold Genes: 13
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (15.38%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Bacterial And Archaeal Communities From Various Locations To Study Microbial Dark Matter (Phase Ii)

Source Dataset Sampling Location

• Location Name: Malawi: Central Region
• Coordinates
  • Lat. (^o): -13.5167
  • Long. (^o): 34.7703
  • Depth (m): 45

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001018	Metagenome / Metatranscriptome	804	Y
F016142	Metagenome / Metatranscriptome	249	Y
F022857	Metagenome	212	Y
F053230	Metagenome	141	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208048_100548310	F053230	N/A	MFDFILSSITSVVHDLLWTAAAALLAYTLNKIQSHFQRG
Ga0208048_100548313	F016142	N/A	FRLADRPVDLDGELEDEQEQRSDFGEPSCSCGSFQRQLAHLPGLQAEIQGYKPWCIHLSWFKKYRELLGRRTEVRNACPAYAPDKCVAWWYTPPADATSDGRFMLLHTKHGAQAPLTHWRNYKPKEVFTQHDAWTLFDSMLESGYVPFPGVALPQLKTTQKADDLDRQTSTGSQG
Ga0208048_10054836	F022857	N/A	MDPIAVPKLTVSFAVDLEIEYDSFGGKTPEELAETVQDELDDLLFEANSGIVGVITTLTAVESNV
Ga0208048_10054839	F001018	N/A	MTQITTTKLKELNVIQLYEHYGALERSFPLLASDSQDLARAELESCLALRSEKVDRIYYALEAHEDAIERIKKEKVLILKAQKHHENQVTGLKRLLNYLKRVLPVDTNKITGRNYQFTLVRKKDLTVEVNSDPEYWSSDERLKFCVEEEITTTKRIVLRSLSGEILEERIEPSDKTNIVPNLDAIRNAHQTGQPLPSGVKVFQEYGIRSNRIYGKSSMDLAPSEYPGDLLPEDRSADEC