Scaffold Ga0208180_1033548

Overview

Basic Information

• Taxon OID: 3300025277
• Scaffold ID: Ga0208180_1033548
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s16 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1430
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 7.24
  • Depth (m): 2766

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000126	Metagenome / Metatranscriptome	2021	Y
F029432	Metagenome	188	Y
F053300	Metagenome / Metatranscriptome	141	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208180_10335483	F029432	N/A	MNNGKGQLVGWSVVLLMWTGCGVGLSCIQTQEKGNNEVVNTAESMIEWIGHDVESGKLDSTIADTYVMNLEEIINKVNCENCDEID
Ga0208180_10335484	F000126	N/A	MSKRNYNITRKKGEWYNAKVTDSHGNEYQNYFEHAHEANDWIYYIWEKEDWFNSVDSEELLANAIHDCKQMDEEAGRRAIL
Ga0208180_10335486	F053300	AGG	MKEIDQMLGQWIHSSIIRAKLRELIVKENFKSFDLGVEHKKE