NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208814_1039127

Scaffold Ga0208814_1039127


Overview

Basic Information
Taxon OID3300025276 Open in IMG/M
Scaffold IDGa0208814_1039127 Open in IMG/M
Source Dataset NameMarine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1447
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → unclassified Bacteroidetes → Bacteroidetes bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location NameSouth Georgia Island
CoordinatesLat. (o)-50.35Long. (o)-39.82Alt. (m)Depth (m)4
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F017499Metagenome / Metatranscriptome240Y
F087903Metagenome / Metatranscriptome110Y

Sequences

Protein IDFamilyRBSSequence
Ga0208814_10391271F017499N/AMSRHNSRMHGVKEDNLYVDLNWGFDHTLGYWYDIIETCDDKETVMEEWNSEMGGTRSKMLEFLIKYNLPESHRSAVALDMQF
Ga0208814_10391275F087903N/AMINSEREWDYMDEAVQIEEILTEANAYNLKQEVMTTAAIFMKDDPELDKVSAYNMAYLEWVK

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