Scaffold Ga0208814_1022854

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1022854
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2067
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (37.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → unclassified viruses → unclassified DNA viruses → unclassified dsDNA viruses → Prokaryotic dsDNA virus sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F028622	Metagenome	191	Y
F067117	Metagenome	126	N
F080239	Metagenome	115	N
F092711	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10228541	F028622	N/A	MKDEDKTYENEVTPIVNDDRGSLDLNRQIDDLNIKVKNLDGLEKLHKETNGDLRVHIIKLDREIYQLKKDMAMQNETHQMDIIQKDNEIGRLI
Ga0208814_10228543	F092711	AGGAG	MVQLEITLTGRSKSFTSDTLQDCAKQFFDEFGEASKEVVKCHTFEVNDPTQFMSIGGNESCIGWLKQMQQGAIDDK
Ga0208814_10228547	F067117	N/A	MNTKNKEKMKMLQIPVTEKQFDTLKDKADKEKRSLPNSILIILDPHMKAK
Ga0208814_10228548	F080239	N/A	VNRNSIMLKIAHRQNRIVGEVFSSLNLENTSSLKHLLESKNNIVYKKFSGVINPPILDRWNWLVVIPQQFNRYANPCNLLTVLVPLISIIKNYLLLIKNNIKKSLIIKKEKHEH