Scaffold Ga0208814_1004451

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1004451
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5565
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (13.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Parvibaculaceae → Parvibaculum → unclassified Parvibaculum → Parvibaculum sp. (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F092750	Metagenome	107	N
F094421	Metagenome / Metatranscriptome	106	N
F094422	Metagenome	106	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100445110	F092750	N/A	VANAKKYKNQQIQNINMKILTPKEKAIDIIHKISKVNVECSKLLAIVVVNEIIKQNDNTNYWEKVKSEIIMLNEQ
Ga0208814_100445112	F094421	N/A	MKLEGLEILKKSIVKQIEYDNVKIVRMEQKLKEIEKKIFEIKNQ
Ga0208814_100445113	F094422	AGGTGG	MKKYIIESDTPLFDFKLEYPRIHIDMEYAATLSNFELLSYLDEEFMFYHERIDR