Scaffold Ga0208814_1000508

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000508
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 23611
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (30.36%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F061285	Metagenome / Metatranscriptome	132	Y
F083269	Metagenome / Metatranscriptome	113	Y
F099888	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_100050811	F061285	N/A	MKKKLSTFKKKKPLERKIADDLVRTHERNEKLRDKNINTSFLDLF
Ga0208814_100050831	F099888	N/A	MSRKYIIAKTNVGLGGFFKVGGKRYHGPSWQEVEEDTTFTDLEFEPTPFAELFEEKKEEKQWKFISARSGDEYVVRFNIRNELSCSCWGYIGHGKCKHIKEVKEELND
Ga0208814_100050839	F083269	N/A	MSIKKVSVTKTSSFTVDGEGRVSRERIVDLSHDWSEKDIILFKKIAKQGGVCRIKGKKYTVVPGEKITNSQFQPDGGAAKMHGPEE