Scaffold Ga0208814_1000420

Overview

Basic Information

• Taxon OID: 3300025276
• Scaffold ID: Ga0208814_1000420
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 27438
• Total Scaffold Genes: 48
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 2 (4.17%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 6

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: South Georgia Island
• Coordinates
  • Lat. (^o): -50.35
  • Long. (^o): -39.82
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001913	Metagenome / Metatranscriptome	618	Y
F006002	Metagenome / Metatranscriptome	384	Y
F011526	Metagenome / Metatranscriptome	290	Y
F013571	Metagenome / Metatranscriptome	270	Y
F030762	Metagenome / Metatranscriptome	184	Y
F063092	Metagenome / Metatranscriptome	130	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208814_10004202	F030762	N/A	MQDLKLAFINSLTLTVSFSNAEQWLKLTLLVVSIAYTVLKIFNLKKKSE
Ga0208814_100042026	F063092	N/A	MVEDKIIWQGVKERITSKMSNQDFKTMCRLHAKYFNHKYSEPCTCNKNRLRQWIEQLNNKLL
Ga0208814_100042030	F011526	N/A	MDNLQMIATVECFIHHKTGKEIRITKPNKPNHYLLLVKAFENCKGFFIKI
Ga0208814_100042036	F001913	N/A	MIENILELLKNTDCKSEIVQLAKGKNKFPESFKEVFTRQKQDLEWKR
Ga0208814_100042039	F006002	N/A	MRAVYCKCKNTYSIQCNNNTDKNCKTPEYWKQGIGSIHKAEE
Ga0208814_10004204	F013571	N/A	VYLEYFKQDQIMEINLILLMPNAMMLGCQYHEPEKGFEYSEVNFFLFFGQIQVRWE