Scaffold Ga0207666_1018578

Overview

Basic Information

• Taxon OID: 3300025271
• Scaffold ID: Ga0207666_1018578
• Source Dataset Name: Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1010
• Total Scaffold Genes: 3
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (33.33%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location

• Location Name: Kellogg Biological Station, Michigan, USA
• Coordinates
  • Lat. (^o): 42.3948
  • Long. (^o): -85.3738
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F026650	Metagenome / Metatranscriptome	197	Y
F068677	Metagenome	124	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207666_10185782	F068677	GAG	MADADSRHLSETRSVSGLQHHFVQLGRRMERIPSQGVAAKHISAMKFSTEAIVALAVAVVFVLLSLGAIAREQGQGPARGGHNAYIAVSDVNLSRVAPSQTDILGFY
Ga0207666_10185783	F026650	N/A	LDLCPEMVRTDLLADASLGPFHYWIRRAGRLSRKLSASVVRALESRRNPDGIEGNQLAAS