Scaffold Ga0208032_1027829

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1027829
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1532
• Total Scaffold Genes: 6
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000720	Metagenome / Metatranscriptome	923	Y
F053545	Metagenome	141	Y
F090883	Metagenome / Metatranscriptome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_10278293	F000720	GAGG	MILNKEDKIVRAEIPDRMMSTTFTLPIDDRKVVGIVNYTADTNGVTPLAFWVKIKPTDSYLDRELRASGKLISRCLQHGEDLKDLADTLSQDNIIGQMVNYFHKNVEDIILGTPIDKKQRMLSTDPYASTMKE
Ga0208032_10278295	F090883	GGAGG	MVTAMKRINNCRDMLTQATCPRMRKMWKRNYEKLLRKYWEDVGGRTLSAAGQVH
Ga0208032_10278296	F053545	N/A	EMDCPMCEEIITHMGMQVSIHNGYVMLPIEHTRKNIEGGRESKIKWSGETLPEVGKE