Scaffold Ga0208032_1010905

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1010905
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2922
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (40.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → environmental samples → uncultured virus (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002594	Metagenome / Metatranscriptome	545	Y
F011527	Metagenome	290	Y
F024421	Metagenome	206	Y
F031263	Metagenome	183	Y
F098074	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_101090511	F098074	AGGAG	MVDQSQEEILEVQTKNKQIKYTSDTAKMFDEWLKQCPVVYYLSEQVDEEVNKIIKYTFDKKVRRK
Ga0208032_10109052	F002594	N/A	MAKIPTTRLNSAPREYIADDFNQLIEDLQDMIKILNSTYPKDQNDERDRQVWFLGG
Ga0208032_10109053	F024421	AGGAG	MSQALMSKLSHKRNLEAQWASELLANGEVTVQMVKISKEVKEVEREIKEVTENKD
Ga0208032_10109054	F011527	N/A	MLVYFQFRRCGYYARGLVEADSLDAASKALWAEHVGTFKWEDQTKDQPEEANYLTIEEYKHEPSFNVEAEPQKEFRSPVG
Ga0208032_10109059	F031263	N/A	MKTVILYLIVILNSGDDYELRRIISYKELTCFNWYEKNIIFRNNNSSKYNDLYVAGYICQYEKGE