Scaffold Ga0208032_1001385

Overview

Basic Information

• Taxon OID: 3300025266
• Scaffold ID: Ga0208032_1001385
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_66 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10507
• Total Scaffold Genes: 24
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (20.83%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 5

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: West Anvers Island
• Coordinates
  • Lat. (^o): -64.45
  • Long. (^o): -64.88
  • Depth (m): 4

Associated Families

Family	Category	Number of Sequences	3D Structure?
F003058	Metagenome / Metatranscriptome	510	Y
F003647	Metagenome / Metatranscriptome	475	Y
F004192	Metagenome / Metatranscriptome	449	Y
F037813	Metagenome / Metatranscriptome	167	Y
F101868	Metagenome / Metatranscriptome	102	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208032_100138512	F003058	N/A	MNKIAEMVVDKIIARQKAYDEEFKAEIQGMVDDNDNIEFGTITEDEIISEELIKLKNRLLQLEDNEDYEAAGIVANKIKHLKNKYNL
Ga0208032_100138515	F003647	N/A	MVMCEWTLADIKNRASNKAFAKVTILKLDIEDYKRSLKQGTYGGITYKEAEQVLEGYKTELQVWNYITELIEKQ
Ga0208032_100138516	F037813	N/A	MNKLNLYEQLKPEYKTSISEKFKTREHSHDALIRALSDEYYFTEVKYGDAFDIMDSCDLDFLGDAFNKESQW
Ga0208032_100138521	F101868	N/A	MEVLIINGRRYLINTSTPDGGDSICEWLLKQFKDEPVLDWDTPKLSDFTNKIR
Ga0208032_10013859	F004192	N/A	MKQDFNEWMANIKNIHYADNEQMLNAFEKLDNYEEI