NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F101868

Metagenome / Metatranscriptome Family F101868

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F101868
Family Type Metagenome / Metatranscriptome
Number of Sequences 102
Average Sequence Length 53 residues
Representative Sequence MEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIR
Number of Associated Samples 82
Number of Associated Scaffolds 102

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 3.92 %
% of genes near scaffold ends (potentially truncated) 24.51 %
% of genes from short scaffolds (< 2000 bps) 85.29 %
Associated GOLD sequencing projects 69
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (40.196 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine
(29.412 % of family members)
Environment Ontology (ENVO) Unclassified
(69.608 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Saline → Water (saline)
(77.451 % of family members)



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Multiple Sequence Alignments

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Full Alignment
Alignment of all the sequences in the family.
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IDLabel
.2.4.6.8.10.12.14.16.18.20.22.24.26.28.30.32.34.36.38.40.42.44.46.48.50.52.54.56.58.60.62.64.66.68.70.72.
1DelMOSum2010_100567187
2DelMOSum2010_100674033
3DelMOSum2010_100746123
4DelMOSum2010_102342863
5LPaug08P2610mDRAFT_10326722
6BpDRAFT_100528641
7JGI24006J15134_100432666
8JGI24006J15134_101247573
9JGI24006J15134_101745173
10JGI24006J15134_101805442
11JGI24006J15134_101971901
12JGI24003J15210_100909535
13JGI24004J15324_100284926
14JGI24004J15324_101597642
15JGI24523J20078_10085004
16JGI24513J20088_10096041
17Ga0063282_10981565
18Ga0066605_100215973
19Ga0066223_10564983
20Ga0070727_104232211
21Ga0070726_102334026
22Ga0075466_10423236
23Ga0075441_103346841
24Ga0075447_1000368210
25Ga0075495_14584422
26Ga0099972_102440211
27Ga0075467_105962163
28Ga0070754_105326381
29Ga0070750_101353025
30Ga0075444_102619573
31Ga0102817_100247514
32Ga0102825_10118262
33Ga0105668_11266583
34Ga0105741_11151031
35Ga0105745_10748263
36Ga0105746_10727261
37Ga0105747_10694474
38Ga0102831_10601675
39Ga0102816_10164054
40Ga0114995_100898937
41Ga0114915_10508111
42Ga0115005_111715872
43Ga0115003_108080552
44Ga0115001_102227482
45Ga0114922_102575096
46Ga0181419_11659532
47Ga0181389_10540864
48Ga0181389_10576514
49Ga0181430_11279551
50Ga0206125_102929102
51Ga0211690_10376006
52Ga0211689_10181286
53Ga0211677_102715252
54Ga0211678_102115271
55Ga0211576_104133444
56Ga0210334_108756682
57Ga0212023_10196324
58Ga0224503_103172292
59Ga0224509_102146542
60Ga0233412_100462334
61Ga0255049_101762375
62Ga0207905_10111855
63Ga0207905_10132846
64Ga0207905_10214444
65Ga0207896_10103152
66Ga0207896_10139183
67Ga0208298_10023916
68Ga0209535_100718911
69Ga0209535_11163342
70Ga0209535_12001442
71Ga0209336_101120683
72Ga0209634_12815821
73Ga0208031_10224324
74Ga0208032_100138521
75Ga0208814_10265412
76Ga0208814_10628241
77Ga0208643_10001194
78Ga0209374_100505820
79Ga0208941_10039607
80Ga0208797_10061712
81Ga0208674_10157344
82Ga0208438_10482252
83Ga0209482_10604301
84Ga0209816_10200274
85Ga0209121_101758081
86Ga0209192_101254241
87Ga0208671_102011181
88Ga0209379_101239844
89Ga0209379_102561181
90Ga0209830_100112505
91Ga0307488_100189373
92Ga0307488_102324065
93Ga0307488_103881143
94Ga0307488_104468843
95Ga0307488_108354702
96Ga0307489_104516462
97Ga0302126_100359287
98Ga0308014_11051913
99Ga0302125_101795692
100Ga0308011_102676122
101Ga0302130_10404002
102Ga0308000_101734512
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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 18.87%    β-sheet: 20.75%    Coil/Unstructured: 60.38%
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5101520253035404550MEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIRSequenceα-helicesβ-strandsCoilSS Conf. score
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Gene Neighborhood

Neighboring Pfam domains


Neighboring Clusters of Orthologous Genes (COGs)



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Phylogeny

NCBI Taxonomy

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All Organisms
Unclassified
59.8%40.2%
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Associated Scaffolds



Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).



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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Visualization
Marine
Deep Ocean
Marine
Marine
Deep Subsurface
Background Seawater
Seawater
Marine
Marine Sediment
Aqueous
Sackhole Brine
Marine
Estuary Water
Marine
Estuarine
Marine
Marine
Seawater
Freshwater And Marine
Marine
Seawater
Sediment
Marine
29.4%4.9%3.9%6.9%5.9%3.9%8.8%11.8%2.9%3.9%3.9%
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
DelMOSum2010_1005671873300000101MarineMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKQSDFTNKIR*
DelMOSum2010_1006740333300000101MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIR*
DelMOSum2010_1007461233300000101MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIRL*
DelMOSum2010_1023428633300000101MarineMEVMILNGRRYLINTQVTDGGDYQCEHLLKQFPDDVEINWDEVKLSDFTNKIR*
LPaug08P2610mDRAFT_103267223300000159MarineMILNGKRYLINTQTHDGGDHQCEYLLKQFSDDVEIDWDEVKLSDFTNKIRL*
BpDRAFT_1005286413300000930Freshwater And MarineRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNXXXXXXXXX*
JGI24006J15134_1004326663300001450MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWGEVKLSDFTNKIR*
JGI24006J15134_1012475733300001450MarineMEVLIINGRRYLINTSTPDGGDSICEWLLKQFRDEPELDWDTPKLSDFTNKIR*
JGI24006J15134_1017451733300001450MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPSDVEVDWDEVKLSDFTNKIR*
JGI24006J15134_1018054423300001450MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPLDVEVDWDEVKPSDFTNKIRL*
JGI24006J15134_1019719013300001450MarineMEVMILNGKRYLINTQTHDGGDXQCEYLLKQFSDDVEIDWDEVKLSDFTNKIRL*
JGI24003J15210_1009095353300001460MarineMEVLIINGRRYLINTSTPDGGDSICEWLIKQFRDEPELDWDTPKLSDFTNKIR*
JGI24004J15324_1002849263300001472MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKDTITTG*
JGI24004J15324_1015976423300001472MarineMEVLIINGRRYLINTSTPDGGDSICEWLLKQFKDEPVLDWDHPKPSDFTNKIR*
JGI24523J20078_100850043300001718MarineMEVLIINGRRYLINTSTPDGGDSICEWLXKQFRDEPELDWDTPKLSDFTNKIR*
JGI24513J20088_100960413300001720MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFSDDVEIDWDEVKLSDFTNKIRL*
Ga0063282_109815653300003878MarineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPPDVEVDWDEVKLSDFTNKIRL*
Ga0066605_1002159733300004279MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEAKLSDFTNKIR*
Ga0066223_105649833300004461MarineMDVPSKPSKNYCLVEVLIINGRRYLINTSTPDGGDSICEWLLKQFRDEPELDWDTPKLSDFTNK
Ga0070727_1042322113300005590Marine SedimentVDVPSEPSKNYCLMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKQSDFTNKIR*
Ga0070726_1023340263300005600Marine SedimentMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPK
Ga0075466_104232363300006029AqueousNGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKQSDFTNKIR*
Ga0075441_1033468413300006164MarineMQVMILNGERYLINTQTHDGGDQQCDHLLKQFPDNVEIDWDEVKSSDFTSKIRL*
Ga0075447_10003682103300006191MarineMEVLIINGRRYLINTSTSDGGDSICEWLLKQFKDEPVLDWDTPKLSDFTNKIR*
Ga0075495_145844223300006399AqueousMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKPSFYKQNTIITG*
Ga0099972_1024402113300006467MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPPDVEVDWDEVKLSDFTNKIRL*
Ga0075467_1059621633300006803AqueousRMDVPSEPSKNYCLMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKPSDFTNKIR*
Ga0070754_1053263813300006810AqueousPSKNYCLMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKPSDFTNKIR
Ga0070750_1013530253300006916AqueousPSKPSKNYCVMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKQSDFTNKIR*
Ga0075444_1026195733300006947MarineMEVLIINGRRYLINTSTPDGGDSICEWLLKQFKDEPVLDWDTPKLSDFTNKIR*
Ga0102817_1002475143300007555EstuarineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKVR*
Ga0102825_101182623300007655EstuarineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIR*
Ga0105668_112665833300007758Background SeawaterMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVIDWDQPKLSDFTNKIR*
Ga0105741_111510313300007956Estuary WaterRYLINTQTHDGGDHQCEYLLKQFPDNVEIDWDEVKLSDFTNKIR*
Ga0105745_107482633300007972Estuary WaterMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDNVEIDWDEVKLSDFTNKIR*
Ga0105746_107272613300007973Estuary WaterDVSSEPSKNYCLMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKQSDFTNKIR*
Ga0105747_106944743300007974Estuary WaterMEVMILNGKRYLINTQTYDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIR*
Ga0102831_106016753300008996EstuarineMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKPSDFTNKIR*
Ga0102816_101640543300008999EstuarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKVR*
Ga0114995_1008989373300009172MarineMEVLIINGRRYLINTSTPDGGDSICEWLLKQFRDEPELDWGTPKLSDFTNKIR*
Ga0114915_105081113300009428Deep OceanMEVMILNGERYLINTQTHDGGDHQCDYLIKQFPDDVEIDWDEVKHSDFTNKIRL*
Ga0115005_1117158723300009432MarineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPSDVEVDWDEVKLSDFTNKIRL*
Ga0115003_1080805523300009512MarineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPSDVEVDWDEVKLSDFTNKIR*
Ga0115001_1022274823300009785MarineMEVLIINGRRYLINTSTPDGGDSVCEWLIKQFRDEPELDWDTPKLSDFTNKIR*
Ga0114922_1025750963300011118Deep SubsurfaceMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIRL*
Ga0181419_116595323300017728SeawaterMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKPSDFTNK
Ga0181389_105408643300017746SeawaterMEVIILNGKRYLINTQVTDGGDHQCEHLLKQFPDDVEIDWDEVKLSDFTNKIR
Ga0181389_105765143300017746SeawaterMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKPSD
Ga0181430_112795513300017772SeawaterLMEVMILNGRRYLINTQVTDGGDYQCEHLLKQFPDDVEIDWDEVKLSDFTNKIR
Ga0206125_1029291023300020165SeawaterMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIRL
Ga0211690_103760063300020335MarineGERYLINTQTHDGGDHQCDYLIKQFPDDVEIDWDEVKHSDFTNKIRL
Ga0211689_101812863300020358MarineMEVMILNGERYLINTQTHDGGDHQCDYLIKQFPDDVEIDWDEVKHSDFTNKIRL
Ga0211677_1027152523300020385MarineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEAKLSDFTNEIRL
Ga0211678_1021152713300020388MarineINGRRYLINTQVTDGGDYQCEHLLKQFPPDAEIDWDEAKPSDFTNEIRL
Ga0211576_1041334443300020438MarineKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIR
Ga0210334_1087566823300021859EstuarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIR
Ga0212023_101963243300022061AqueousMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKQSDFTNKIR
Ga0224503_1031722923300022201SedimentMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIR
Ga0224509_1021465423300022306SedimentMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKVR
(restricted) Ga0233412_1004623343300023210SeawaterMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPPDVEVDWDEVKPSDFTNKIRL
(restricted) Ga0255049_1017623753300024517SeawaterRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIR
Ga0207905_101118553300025048MarineMEVLIINGRRYLINTSTPDGGDSICEWLLKQFRDEPELDWDTPKLSDFTNKIR
Ga0207905_101328463300025048MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPLDVEVDWDEVKP
Ga0207905_102144443300025048MarineMEVLIINGRRYLINTSTPDGGDSICEWLIKQFRDEPELDWDTPKLSDFTNKIR
Ga0207896_101031523300025071MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWGEVKLSDFTNKIR
Ga0207896_101391833300025071MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFSDDVEIDWDEVKLSDFTNKIRL
Ga0208298_100239163300025084MarineMEILIINGRRYLINTQVTDGGDYQCEHLLKQFPPDAEIDWDEAKPSDFTNEIRL
Ga0209535_1007189113300025120MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPLDVEVDWDEVKSSDFTNKIRL
Ga0209535_111633423300025120MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPEDVEIDWDEVKLSDFTNKIR
Ga0209535_120014423300025120MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPSDVEVDWDEVKLSDFTNKIR
Ga0209336_1011206833300025137MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPPDVEVDWDEVKLSDFTNKIRL
Ga0209634_128158213300025138MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPPDVEVDWDEVKPSDFTNKIRL
Ga0208031_102243243300025237Deep OceanMQVMILNGERYLINTQTHDGGDQQCDHLLKQFPDNVEIDWDEVKSSDFTSKIRL
Ga0208032_1001385213300025266Deep OceanMEVLIINGRRYLINTSTPDGGDSICEWLLKQFKDEPVLDWDTPKLSDFTNKIR
Ga0208814_102654123300025276Deep OceanMEVLIIDGRRYLINTSTPDGGDSVCEWLLKQYDKTALVEFSEVTHADFTNKIRL
Ga0208814_106282413300025276Deep OceanILNGERYLINTQTHDGGDHQCDYLIKQFPDDVEIDWDEVKHSDFTNKIRL
Ga0208643_100011943300025645AqueousMDVPSEPSKNYCLMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKQSDFTNKIR
Ga0209374_1005058203300025705MarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEAKLSDFTNKIR
Ga0208941_100396073300027077MarineMEVMILNGRRYLINTQVTDGGDHQCEHLLKQFPDDVEIDWDEVKLSDFTNKIR
Ga0208797_100617123300027186EstuarineMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKVR
Ga0208674_101573443300027190EstuarineMEVLVINGRRYLINTSTQDGGDSICEWLLKQFKDEPVLDWDQPKPSDFTNKIR
Ga0208438_104822523300027196EstuarineMEVMILNGKRYLINTQTHNGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKVR
Ga0209482_106043013300027668MarinePSKLSKNYCLMEVLIINGRRYLINTSTPDGGDSICEWLLKQFKDEPVLDWDTPKLSDFTNKIR
Ga0209816_102002743300027704MarineMEVLIINGRRYLINTSTSDGGDSICEWLLKQFKDEPVLDWDTPKLSDFTNKIR
Ga0209121_1017580813300027742MarineMEVMILNGRRYLINTQVTDGGDYQCEHLLKQFPDDVEIDWDEVKLSDFTNKIR
Ga0209192_1012542413300027752MarineMEVLIINGRRYLINTSTPDGGDSICEWLLKQFRDEPELDWGTPKLSDFTNKIR
Ga0208671_1020111813300027757EstuarineRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKVR
Ga0209379_1012398443300027758Marine SedimentMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPPDVEVDWDEVKLSDFTNKIRL
Ga0209379_1025611813300027758Marine SedimentMEVMILNGKRYLINTQTHDGGDHQCEYLLKQFPDDVEIDWDEVKLSDFTNKIRL
Ga0209830_1001125053300027791MarineMEVLIINGSRYLINTSTLDGGDSICEWLLKQFRNEPELDWDTPKLSDFTNKIR
Ga0307488_1001893733300031519Sackhole BrineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPPDVEVDWDEVKLSDFTNKIR
Ga0307488_1023240653300031519Sackhole BrineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPSDVEVDWDEVKLSDFTNKIR
Ga0307488_1038811433300031519Sackhole BrineMEVLIINGRRYLINTSTPDGGDSICEWLLKQFKDEPELDWDTPKLSDFTNKIR
Ga0307488_1044688433300031519Sackhole BrineMEVLIINGRRYLINTSTPDGGDSVCEWLLKQFRNEPELDWDTPKLSDFTNKIR
Ga0307488_1083547023300031519Sackhole BrineMEVLIINSRRYLINTSTPDGGDSICEWLLKQFRDEPELDWDTPKLSDFTNKIR
Ga0307489_1045164623300031569Sackhole BrineMILNGKRYLINTQTHDGGDHQCEYLLKQFPSDVEVDWDEVKLSDFTNKIRL
Ga0302126_1003592873300031622MarineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPLDVEVDWDEVKPSDFTNKIR
Ga0308014_110519133300031628MarineLMQVMILNGERYLINTQTHDGGDQQCDHLLKQFPDNVEIDWDEVKSSDFTSKIRL
Ga0302125_1017956923300031638MarineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPLDVEVDWDEVKP
Ga0308011_1026761223300031688MarineMQIMILNGERYLINTQTHDGGDQQCDHLLKQFPDNVEIDWDEVKSSDFTSKIRL
Ga0302130_104040023300031700MarineMEVMILNGRRYLINTQTHDGGDHQCEYLLKQFPLDVEVDWDEVKPLDFTNKIR
Ga0308000_1017345123300031848MarineMILNGERYLINTQTHDGGDQQCDHLLKQFPDNVEIDWDEVKSSDFTSKIRL


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