Scaffold Ga0208467_1019668

Overview

Basic Information

• Taxon OID: 3300025265
• Scaffold ID: Ga0208467_1019668
• Source Dataset Name: Marine microbial communities from the Deep Pacific Ocean - MP2098 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1271
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (100.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: North Pacific Ocean
• Coordinates
  • Lat. (^o): 14.53
  • Long. (^o): -118.77
  • Depth (m): 294

Associated Families

Family	Category	Number of Sequences	3D Structure?
F085555	Metagenome	111	N
F092206	Metagenome / Metatranscriptome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208467_10196682	F092206	AGGAG	MNKWIADLQANGYDWQRDRRLFQVCGMVTALTLETKTRMMMTSRRKAPSPYIWLKKNLNCSGSREKVLKRANEWIGQYFKAGPMPKYLADQLEKGNVEITIPGKLIQKGESNGS
Ga0208467_10196684	F085555	AGGAG	MKIKRIGGNMERYTETDVIKRFEKVVKDRMTVRVFNAMPRTYRDVFLLSEVREEMTRYIVKLLNCDKNVNNRIQYLADDIDKQWKEM