Scaffold Ga0208029_1036228

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1036228
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1111
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F013821	Metagenome	268	Y
F089039	Metagenome	109	Y
F093981	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10362282	F093981	N/A	VSTNQEARQATCRAATGTALTVDGDWLAMADANGFTTGTINERIMLYFNAALGATWGVAAWDEVAWDGAGADHTNINEAAAAFGESNGITGPGSLFSQLGSF
Ga0208029_10362283	F013821	AGG	MATNQEARQTSIRAVTSTTGTYNEDWLALFTARSAPAGTYNERLLSYINTLLSTSHTNLEDAMQALAADQSADNFSSMGTFTP
Ga0208029_10362284	F089039	AGGAGG	MAKNSKGFPGPMTRAQMGAYKGIQKAETYPGGLDIRAGNELGFRSKGWRVKRGADKPGTFGMKLRKA