Scaffold Ga0208029_1002970

Overview

Basic Information

• Taxon OID: 3300025264
• Scaffold ID: Ga0208029_1002970
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_s12 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 6208
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (35.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 39.48
  • Long. (^o): 6.37
  • Depth (m): 2851

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002232	Metagenome / Metatranscriptome	580	Y
F006484	Metagenome	372	Y
F072435	Metagenome / Metatranscriptome	121	Y
F090489	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208029_10029701	F090489	N/A	CTQCGEIKYLKDYYKDERRKSGYHVRCKECERKWLIEYRNTEIGYLKHRYNNMRRNFKTQKRGRKNKRYFTFNEFLAAFKKHKSIYGMRSAWGPGVDHLEQHLPITIITRGMKRANGQKTPRERSNLSADRLDSDQDYTLQNLIFIRNDENARKKNTTYKDCKIQMRLHEERFKNEIQS
Ga0208029_100297012	F072435	N/A	MKKFTIEISHASPGQLLTIAAELKIMSHSWQKFGPRITIDNKKLQALELRVPSHKRQASSLTRP
Ga0208029_100297017	F006484	N/A	MNNKEIAYQNTLDGMFANRCHGCGCTPKNDEWSDRAKNLCIDCQTNEE
Ga0208029_10029705	F002232	N/A	MEKAVKKLRKLKDQLDKLEEKEDDLLNELDEVISELEESNDD