Scaffold Ga0207899_1002472

Overview

Basic Information

• Taxon OID: 3300025257
• Scaffold ID: Ga0207899_1002472
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-134 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 5083
• Total Scaffold Genes: 11
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (63.64%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes → unclassified Gemmatimonadetes → Gemmatimonadetes bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): 18.3272
  • Long. (^o): -52.639

Associated Families

Family	Category	Number of Sequences	3D Structure?
F050672	Metagenome	145	Y
F064630	Metagenome / Metatranscriptome	128	N
F077182	Metagenome / Metatranscriptome	117	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0207899_100247210	F077182	AGGA	MTTVAQMKTALGLTDSQLTKVTEYLDRVSPKTEANGATARANTMDDFKDHIVSHYASLVQSDLKQQVAAPAFD
Ga0207899_10024725	F050672	GAGG	MPNDPIIIGIAVLAIAVLGYTAISGMMSSTKSGKDKTDKGA
Ga0207899_10024729	F064630	GAGG	MKYVKIEEIKGYEDARINIGTAEAEDMLDSKSALRMFAINSEPGEDVEAWVKVQKVIESIGKANGYIAIEDDHWTQAMKNKKKVAAQIFGINCPQILSNFDALVSDEVPAMK