Scaffold Ga0208182_1015335

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1015335
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2004
• Total Scaffold Genes: 8
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 6 (75.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → uncultured Mediterranean phage uvDeep-CGR2-KM22-C255 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F034348	Metagenome / Metatranscriptome	175	Y
F068133	Metagenome / Metatranscriptome	125	Y
F068939	Metagenome / Metatranscriptome	124	N
F080487	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_10153351	F080487	AGGA	MDFKKMLLETTDQQNHARWTGAVYALRDLMNHMQGLLKAKGCTHKSFSEDMVQYVGEELKRYKELSETTEIGKKMKEIKDIQ
Ga0208182_10153352	F034348	AGGAGG	MEQKQTAKAPMSVRVTEKTMPLTKWFAEQYFQTHALMSKDPRYKSLPSYNQTSCIATVMIATNGALDSDRARKRAEKLIEISNKDQAKTA
Ga0208182_10153353	F068939	AGGAGG	MKQYEKYSDTALSIITYPIRLCIGVYNAVERHMPSKVECNYEIKKKGYDIVRKKEDKNGTKADS
Ga0208182_10153357	F068133	AGGA	MQLAIDVFTDMMTSKEIYIIIGACIIMWIAMEWMDR