Scaffold Ga0208182_1002320

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1002320
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 7780
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (75.00%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 5 (83.33%)
• Associated Families: 6

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000704	Metagenome	928	Y
F001606	Metagenome	664	N
F001922	Metagenome	617	Y
F003616	Metagenome	477	Y
F014859	Metagenome	259	N
F089041	Metagenome	109	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100232010	F089041	N/A	MPEELAVKIRTGQIRINSQEKLHKTFNLNISEFALLEQLKQKWGFADYSETVLYCIWLASVSDGIETA
Ga0208182_100232012	F001606	GAGG	MTYGYDDVSTTSLGTGVAETQLNGGTSLSAPDPAHGFLACIPYQSESAAFTVDESLLTAFRIQSDDVAVEPKKFVLPNVNTGDASFTSVAAPALLAYPINTPLAGGEHLNFYGQPLVANTVAPICGATVIYDTDGTNGAESYYTRPTNETAAATAVDTRTEGGSMTIQGGNEITGLYTVVSGATATASQHDVGYSEFLSPDFNTSMPYRVAIQPTYTGLGSNANAVTGGGGLMQYNMPRGKGIPLANNVTITNYFTNRDARTGASNFINFVRYTKN
Ga0208182_100232013	F000704	AGGTGG	MPHTTGEILPSRVKAVITYDVANYGEDLFLPFTDVGLTETALTYSGVTMTRDLENSNQPMDVFPAVFSDTDSGLLLNEGNNNAFSQTYTFLPDMTAIIYAIHLNIPTVLTCSAFTSGTLNIGGLHIKITERSTDDRLLYENTFQSGAANLTGTGTSLHWFTRDIVETIQVTKGNPIDILVELKTVVTGTNTRQEGYAPVAPYLKTAVMKRFTPAGIALHLHADLSHADGVLKYKKTRVSNLGQ
Ga0208182_100232014	F014859	AGG	LVNELIPAEIIPLVWFAGISVTVYFFFRKFSDVIKEKIKHTTRKSKTVNTEEAGDQFDNLVNNAPRILDEVNKEIAAQREQGVTDEQMKGLLQKKQLLELGTSIPPEVYNLVGKPLVKKLIGFVGKI
Ga0208182_100232015	F001922	AGG	MVIQKLLVEEGIKRGLKESQKYSVSVLGYDFIGLVSRLAVFFVMAFLINSYFIATIQGGIWLNSLGSFFNMKFPSTLPQWLTQLFTTGYKGFTFWNLVTTISVLIVVVEAMQYDRMLKEKGQKPNITTLAVFGVIALGLSLITFPTIIQKLQEQRIIKNA
Ga0208182_10023203	F003616	AGAAGG	MIWSEKLGKEIGTYSSLGGLRINPKPFIHSTQNTVVTCRICKGVGCNAITHESGLVTLNPCVLCKGKKMRSNRIG