Scaffold Ga0208182

Basic Information
Taxon OID	3300025251 Open in IMG/M
Scaffold ID	Ga0208182_1001212 Open in IMG/M
Source Dataset Name	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300025251 Open in IMG/M

Scaffold ID

Ga0208182_1001212 Open in IMG/M

Source Dataset Name

Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	12617
Total Scaffold Genes	23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	20 (86.96%)
Novel Protein Genes	8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	7 (87.50%)
Associated Families	8

Scaffold Components

Scaffold Length (bps)

12617

Total Scaffold Genes

23 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

20 (86.96%)

Novel Protein Genes

8 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

7 (87.50%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location
Location Name	Mediterranean Sea
Coordinates	Lat. (^o)	43.29	Long. (^o)	8.1	Alt. (m)	Depth (m)	2535
Location on Map

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Source Dataset Sampling Location

Location Name

Mediterranean Sea

Coordinates

Lat. (^o)

43.29

Long. (^o)

8.1

Alt. (m)

Depth (m)

2535

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001651	Metagenome / Metatranscriptome	657	Y
F004651	Metagenome / Metatranscriptome	429	Y
F004769	Metagenome / Metatranscriptome	424	Y
F005219	Metagenome / Metatranscriptome	408	Y
F011621	Metagenome	289	Y
F022976	Metagenome	212	Y
F032720	Metagenome	179	Y
F067113	Metagenome / Metatranscriptome	126	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100121210	F005219	GGAGG	MTNGEKQPIRPILSTIRRTCPECGDDMVVELLRHDPHDTPVLFLVCPCGYWEKPAADIEADLEDRPRMPGF
Ga0208182_100121212	F032720	GAGG	MIIPDYEVGQFVRLKPFPSGADGIRCICNPDKESVVKPLPITAPELGGCWHGVGTTVLRVFKDGGLLLKNRHGFVRGARPDEVCR
Ga0208182_100121214	F004769	N/A	MPGHDQKTTRIQVEVNGFTWRVYGARTGLRWHCHLVELVGPLPLDGPVTQPLRDKIRAALAKALALDESEIARIPADLILA
Ga0208182_100121217	F011621	GAGG	MPDIGDICRARDLGMVGGRLYIWAECPVCHLQRWTTTRPLDKGTRRKCQDCVREKSKRTFKIGRAHTIDQI
Ga0208182_100121218	F001651	GGAG	VALNNGKALAAENRRSQVLQLKQAGETETAIAELVGVSKTQVHNDIHRRLAEVRRDDKEAVQQEYNLQRSRYERLLLRWWSHATGPDDERAAKATQMVLDILRRLDTIGGLIPEKPLIQLQQQNVMVGGVTFADLLREAMDGAGQVVEGECEVANAGTDLAVEN
Ga0208182_10012122	F067113	GGAG	MPKATMHRVECLDCGKVAIRLIPEDIPLYCLRCGSAALMWMPTA
Ga0208182_100121223	F022976	AGGCGG	MGLTVETKDWKAGRRWARRNAIATPGVTYTLLRDGRHLSYRYEDGLMYCTGTGKRVEPYRPWAGFYRKGGDSA
Ga0208182_10012125	F004651	GGAGG	MTTSETIDISNHQTGEAIRAKIENHYAAIHAHLSDDELLGEMEHIGAILDAFKNTLGHLEQRAYQLMEERGATSIPSETYICEMETGWKYDQPSFGPLKEIFNEVDLKKCLTPAHTEEVKIEDKWATSTVKSLATKYGAEALRIFENARTESRGRLKFARREVR

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0208182_1001212

Overview

Ecosystem & Geography

Associated Families

Sequences