Scaffold Ga0208182_1000697

Overview

Basic Information

• Taxon OID: 3300025251
• Scaffold ID: Ga0208182_1000697
• Source Dataset Name: Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG DeepMed_906 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 19598
• Total Scaffold Genes: 28
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (89.29%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Mediterranean Sea
• Coordinates
  • Lat. (^o): 43.29
  • Long. (^o): 8.1
  • Depth (m): 2535

Associated Families

Family	Category	Number of Sequences	3D Structure?
F015150	Metagenome / Metatranscriptome	257	Y
F020920	Metagenome / Metatranscriptome	221	Y
F026850	Metagenome	196	Y
F050672	Metagenome	145	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0208182_100069713	F026850	AGGA	MTTENNITITMQDVDVVASINPDFKQQLLIAAVARDRAEVTQGIEQEAIADKAKK
Ga0208182_100069715	F020920	N/A	MAGIIHGRATASSKGREPIRFTPLPTPIKYLLLEVPSENKGEVYIGGSTVASNNAPAIAKGTTREFTFRHDVKESPGDLSDFYVHFGHNGDVVNYLAITI
Ga0208182_100069717	F015150	AGGA	MHPLSWMFKYFIGAIVGAATVVQAVRIAKFELGNTVEGLIFRLGVHPDKHERDDG
Ga0208182_100069718	F050672	GAGG	MPNDPIIIGIAVIAIAVLGYTAINGMLNSSKGSKKKTDKGV