Scaffold Ga0207880_1005813

Overview

Basic Information

• Taxon OID: 3300025247
• Scaffold ID: Ga0207880_1005813
• Source Dataset Name: Marine viral communities from the Deep Pacific Ocean - MSP-91 (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2164
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (44.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean → Deep Ocean Microbial Communities From The Global Malaspina Expedition

Source Dataset Sampling Location

• Location Name: Pacific Ocean
• Coordinates
  • Lat. (^o): -5.7497
  • Long. (^o): -170.7411

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000563	Metagenome	1022	Y
F000937	Metagenome	828	Y
F001494	Metagenome	683	Y
F077783	Metagenome	117	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0207880_10058131	F077783	N/A	TPIRSPTLYDSWYECSRAAHKESLQILSKIGYKVINEGQIATKYSCEMTEII
Ga0207880_10058132	F000937	AGG	MVKEIILIVFLINGELSLPSFPFEGSVHECFEYGDKMRVELSTYNTEQNAWFLNDGSGTWQGFICE
Ga0207880_10058134	F000563	GGA	VRYKFKVYEEGKEIKDKEAMSYKKVLKSLITGNPKWTGWIEYKNKKDKHVKHNILNGKRI
Ga0207880_10058136	F001494	N/A	MKETNRKKEIMSKTKTDPVKDFQKQAVGQRVCLFYVADRVKGILEDSKTDAQLRDQLEEFKDECVHNIGTNALIERFEY