Scaffold Ga0209646_1000012

Overview

Basic Information

• Taxon OID: 3300025246
• Scaffold ID: Ga0209646_1000012
• Source Dataset Name: Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes)
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 573300
• Total Scaffold Genes: 523
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 353 (67.50%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 6 (85.71%)
• Associated Families: 7

Taxonomy: All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales (Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem: Host-Associated → Plants → Roots → Epiphytes → Unclassified → Arabidopsis Root → Arabidopsis, Maize, Boechera And Miscanthus Rhizosphere Microbial Communities From Different Us Locations

Source Dataset Sampling Location

• Location Name: University of North Carolina, USA
• Coordinates
  • Lat. (^o): 35.9082
  • Long. (^o): -79.0499

Associated Families

Family	Category	Number of Sequences	3D Structure?
F023377	Metagenome / Metatranscriptome	210	Y
F031516	Metagenome / Metatranscriptome	182	Y
F044583	Metagenome / Metatranscriptome	154	Y
F050419	Metagenome / Metatranscriptome	145	Y
F051255	Metagenome / Metatranscriptome	144	Y
F076251	Metagenome / Metatranscriptome	118	Y
F095729	Metagenome	105	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209646_1000012103	F031516	N/A	MLHFDTAQMSAITQAHFFSRVAEFIRDQTTVAAYRQAAQDTSLRTALWAPHWPTLRDASEHDAALFMCFVLACATLGVDATRAAEAVRQTSQPETSMKLFLSERGLLRFSAFDVPDLTRPGAPA
Ga0209646_1000012146	F023377	GAGG	MTHRPVCPPRAIRMAMAALLLLAAAGVQAMTVSYQCTGRRLLTAELSPRKGQLHFEGHDWTVLRVPDKNMARYVSKKDDIEVITKERAMTFTHGGETLQCLLFSDALPGDAPRTLPKN
Ga0209646_1000012255	F095729	GGAGG	MTSTHSKETTVKTTLRQFALVSTLLATAAFPLLSHAQDVRREDRVLHFLDSGHIDANKDGMVSKKEFMDAMSKTWDMHMDDAKKADPMMHKDKMTLQQYLEFSKMFGLNVGS
Ga0209646_100001234	F076251	AGGA	MTTPPRSPFWRVLQLIAGIALFLYALRLLSPMPGDRAGFILLVAILAAGSMALTDSIIGLVVAGLDKMHKKGNE
Ga0209646_1000012400	F051255	GAGG	MHAATAIAPVTQQAANEWAHRQAARTMVRAAMNSDAVIYRRTWPTLEAIETLGEAEYDPTLKFDGFMDSTLDLRDGLSVVEVFAPINDCDGLQEFALLRAHR
Ga0209646_1000012443	F050419	GGAG	MTNASRPTFLRNFGRGAASSSRRPPDLADMGTAFALDEALESGSIDSIVPGDPSPPPVRATVRVAPWRLWLGRKLGA
Ga0209646_100001264	F044583	GGAGG	MDQLLTPNQEILRNRIRFALRRATGFVFDIDAMLRKPELRAKRIGLWRDVADHELSSLLDQLETEFQVDAADEEEAERTVVIRRPEAGATPR